Repository 'chipsequtil'
hg clone https://toolshed.g2.bx.psu.edu/repos/alenail/chipsequtil

Changeset 20:435adb6000f1 (2016-04-04)
Previous changeset 19:c5c452f9c237 (2016-04-04) Next changeset 21:248c4538e4ce (2016-04-04)
Commit message:
Uploaded
modified:
chipsequtil/map_to_known_genes.py
added:
chipsequtil/._map_to_known_genes.py
chipsequtil/._map_to_known_genes.xml
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diff -r c5c452f9c237 -r 435adb6000f1 chipsequtil/._map_to_known_genes.py
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Binary file chipsequtil/._map_to_known_genes.py has changed
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diff -r c5c452f9c237 -r 435adb6000f1 chipsequtil/._map_to_known_genes.xml
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Binary file chipsequtil/._map_to_known_genes.xml has changed
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diff -r c5c452f9c237 -r 435adb6000f1 chipsequtil/map_to_known_genes.py
--- a/chipsequtil/map_to_known_genes.py Mon Apr 04 16:33:47 2016 -0400
+++ b/chipsequtil/map_to_known_genes.py Mon Apr 04 16:41:52 2016 -0400
[
@@ -200,7 +200,6 @@
                 if opts.symbol_xref :
                     out_d['geneSymbol'] = symbol_xref_map[gene['name']]['geneSymbol']
                 peaks_writer.writerow(out_d)
-                print "wrote a row."
                 mapped = True
 
                 # reset map_type
@@ -215,9 +214,7 @@
             map_stats['intergenic'] += 1
 
     if peak_output != sys.stdout:
-        print "arrived here."
         peak_output.close()
-        print "arrived here2."
 
     #if opts.stats_output != sys.stderr :
     #    opts.stats_output = open(opts.stats_output,'w')