| Name | Version | Type | |
|---|---|---|---|
| chipsequtil | 1.0 | package | |
| matplotlib | 1.4 | package | |
| pandas | 0.14.1 | package | |
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| Map the peaks in <peaks file> to genes in <knownGene file>. <knownGene file> isformat is as specified in http://hgdownload.cse.ucsc.edu/goldenPath/hg19/database/knownGene.sql.<peaks file> format is as produced by MACS. If *auto* is chosen (default) file extension is examined for *.xls* for default MACS format or *.bed* for BED format. If the --detail option is provided, the following extra fields are appended to each row: peak loc, dist from feature, map type, map subtype | 0.1 | any | |
| Peaks are assigned to the closest gene and then categorized according to their location at different genomic regions (promoter, intron, exon, or after the gene). Sites >10kb away from any gene are considered intergenic. | 0.1 | any | |