Repository 'qiime2__composition__ancom'
hg clone https://toolshed.g2.bx.psu.edu/repos/q2d2/qiime2__composition__ancom

Changeset 1:4696fc685d83 (2023-01-13)
Previous changeset 0:cba57f5ca371 (2022-08-29) Next changeset 2:e3a9e7cb7b77 (2023-06-08)
Commit message:
planemo upload for repository https://github.com/qiime2/galaxy-tools/tree/main/tools/suite_qiime2__composition commit 69da7976573cc07a363ac66bdacc9269d7cd3732
modified:
qiime2__composition__ancom.xml
added:
test-data/ancombc.test0.metadata.tsv
test-data/ancombc.test0.table.qza
test-data/ancombc.test1.metadata.tsv
test-data/ancombc.test1.table.qza
removed:
test-data/.gitkeep
b
diff -r cba57f5ca371 -r 4696fc685d83 qiime2__composition__ancom.xml
--- a/qiime2__composition__ancom.xml Mon Aug 29 19:20:05 2022 +0000
+++ b/qiime2__composition__ancom.xml Fri Jan 13 22:05:02 2023 +0000
b
@@ -1,22 +1,22 @@
 <?xml version='1.0' encoding='utf-8'?>
 <!--
-Copyright (c) 2022, QIIME 2 development team.
+Copyright (c) 2023, QIIME 2 development team.
 
 Distributed under the terms of the Modified BSD License. (SPDX: BSD-3-Clause)
 -->
 <!--
 This tool was automatically generated by:
-    q2galaxy (version: 2022.8.1)
+    q2galaxy (version: 2022.11.1)
 for:
-    qiime2 (version: 2022.8.1)
+    qiime2 (version: 2022.11.1)
 -->
-<tool name="qiime2 composition ancom" id="qiime2__composition__ancom" version="2022.8.0+q2galaxy.2022.8.1.2" profile="22.05" license="BSD-3-Clause">
+<tool name="qiime2 composition ancom" id="qiime2__composition__ancom" version="2022.11.2+q2galaxy.2022.11.1.2" profile="22.05" license="BSD-3-Clause">
     <description>Apply ANCOM to identify features that differ in abundance.</description>
     <requirements>
-        <container type="docker">quay.io/qiime2/core:2022.8</container>
+        <container type="docker">quay.io/qiime2/core:2022.11</container>
     </requirements>
     <version_command>q2galaxy version composition</version_command>
-    <command detect_errors="aggressive">q2galaxy run composition ancom '$inputs'</command>
+    <command detect_errors="exit_code">q2galaxy run composition ancom '$inputs'</command>
     <configfiles>
         <inputs name="inputs" data_style="paths"/>
     </configfiles>
b
diff -r cba57f5ca371 -r 4696fc685d83 test-data/ancombc.test0.metadata.tsv
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/ancombc.test0.metadata.tsv Fri Jan 13 22:05:02 2023 +0000
b
@@ -0,0 +1,36 @@
+sample-id barcode-sequence bodysite month day subject animal testcolumn singlecolumn AZcolumn
+#q2:types categorical categorical numeric numeric categorical categorical categorical categorical categorical
+L1S8 AGCTGACTAGTC gut 10 28 subject-1 dog test1 value A
+L1S57 ACACACTATGGC gut 1 20 subject-1 dog test2 value Z
+L1S76 ACTACGTGTGGT gut 2 17 subject-1 cow test1 value Z
+L1S105 AGTGCGATGCGT gut 3 17 subject-1 cat test2 value A
+L2S155 ACGATGCGACCA left palm 1 20 subject-1 cat test1 value A
+L2S175 AGCTATCCACGA left palm 2 17 subject-1 cat test2 value A
+L2S204 ATGCAGCTCAGT left palm 3 17 subject-1 bird test1 value Z
+L2S222 CACGTGACATGT left palm 4 14 subject-1 cow test2 value Z
+L3S242 ACAGTTGCGCGA right palm 10 28 subject-1 bird test1 value A
+L3S294 CACGACAGGCTA right palm 1 20 subject-1 dog test2 value Z
+L3S313 AGTGTCACGGTG right palm 2 17 subject-1 dog test1 value Z
+L3S341 CAAGTGAGAGAG right palm 3 17 subject-1 cat test2 value Z
+L3S360 CATCGTATCAAC right palm 4 14 subject-1 cat test1 value A
+L5S104 CAGTGTCAGGAC tongue 10 28 subject-1 bird test2 value A
+L5S155 ATCTTAGACTGC tongue 1 20 subject-1 cow test1 value Z
+L5S174 CAGACATTGCGT tongue 2 17 subject-1 dog test2 value A
+L5S203 CGATGCACCAGA tongue 3 17 subject-1 cat test1 value Z
+L5S222 CTAGAGACTCTT tongue 4 14 subject-1 bird test2 value Z
+L1S140 ATGGCAGCTCTA gut 10 28 subject-2 dog test1 value Z
+L1S208 CTGAGATACGCG gut 1 20 subject-2 dog test2 value A
+L1S257 CCGACTGAGATG gut 3 17 subject-2 dog test1 value A
+L1S281 CCTCTCGTGATC gut 4 14 subject-2 cat test2 value Z
+L2S240 CATATCGCAGTT left palm 10 28 subject-2 cat test1 value A
+L2S309 CGTGCATTATCA left palm 1 20 subject-2 cat test2 value A
+L2S357 CTAACGCAGTCA left palm 3 17 subject-2 bird test1 value Z
+L2S382 CTCAATGACTCA left palm 4 14 subject-2 bird test2 value A
+L3S378 ATCGATCTGTGG right palm 10 28 subject-2 cow test1 value Z
+L4S63 CTCGTGGAGTAG right palm 1 20 subject-2 dog test2 value Z
+L4S112 GCGTTACACACA right palm 3 17 subject-2 cat test1 value A
+L4S137 GAACTGTATCTC right palm 4 14 subject-2 bird test2 value A
+L5S240 CTGGACTCATAG tongue 10 28 subject-2 dog test1 value A
+L6S93 GCGTTACACACA tongue 3 17 subject-2 dog test1 value Z
+L6S20 GAACTGTATCTC tongue 4 14 subject-2 bird test2 value Z
+L6S68 CTGGACTCATAG gut 10 28 subject-2 cow test1 value Z
b
diff -r cba57f5ca371 -r 4696fc685d83 test-data/ancombc.test0.table.qza
b
Binary file test-data/ancombc.test0.table.qza has changed
b
diff -r cba57f5ca371 -r 4696fc685d83 test-data/ancombc.test1.metadata.tsv
--- /dev/null Thu Jan 01 00:00:00 1970 +0000
+++ b/test-data/ancombc.test1.metadata.tsv Fri Jan 13 22:05:02 2023 +0000
b
@@ -0,0 +1,36 @@
+sample-id barcode-sequence bodysite month day subject animal testcolumn singlecolumn AZcolumn
+#q2:types categorical categorical numeric numeric categorical categorical categorical categorical categorical
+L1S8 AGCTGACTAGTC gut 10 28 subject-1 dog test1 value A
+L1S57 ACACACTATGGC gut 1 20 subject-1 dog test2 value Z
+L1S76 ACTACGTGTGGT gut 2 17 subject-1 cow test1 value Z
+L1S105 AGTGCGATGCGT gut 3 17 subject-1 cat test2 value A
+L2S155 ACGATGCGACCA left palm 1 20 subject-1 cat test1 value A
+L2S175 AGCTATCCACGA left palm 2 17 subject-1 cat test2 value A
+L2S204 ATGCAGCTCAGT left palm 3 17 subject-1 bird test1 value Z
+L2S222 CACGTGACATGT left palm 4 14 subject-1 cow test2 value Z
+L3S242 ACAGTTGCGCGA right palm 10 28 subject-1 bird test1 value A
+L3S294 CACGACAGGCTA right palm 1 20 subject-1 dog test2 value Z
+L3S313 AGTGTCACGGTG right palm 2 17 subject-1 dog test1 value Z
+L3S341 CAAGTGAGAGAG right palm 3 17 subject-1 cat test2 value Z
+L3S360 CATCGTATCAAC right palm 4 14 subject-1 cat test1 value A
+L5S104 CAGTGTCAGGAC tongue 10 28 subject-1 bird test2 value A
+L5S155 ATCTTAGACTGC tongue 1 20 subject-1 cow test1 value Z
+L5S174 CAGACATTGCGT tongue 2 17 subject-1 dog test2 value A
+L5S203 CGATGCACCAGA tongue 3 17 subject-1 cat test1 value Z
+L5S222 CTAGAGACTCTT tongue 4 14 subject-1 bird test2 value Z
+L1S140 ATGGCAGCTCTA gut 10 28 subject-2 dog test1 value Z
+L1S208 CTGAGATACGCG gut 1 20 subject-2 dog test2 value A
+L1S257 CCGACTGAGATG gut 3 17 subject-2 dog test1 value A
+L1S281 CCTCTCGTGATC gut 4 14 subject-2 cat test2 value Z
+L2S240 CATATCGCAGTT left palm 10 28 subject-2 cat test1 value A
+L2S309 CGTGCATTATCA left palm 1 20 subject-2 cat test2 value A
+L2S357 CTAACGCAGTCA left palm 3 17 subject-2 bird test1 value Z
+L2S382 CTCAATGACTCA left palm 4 14 subject-2 bird test2 value A
+L3S378 ATCGATCTGTGG right palm 10 28 subject-2 cow test1 value Z
+L4S63 CTCGTGGAGTAG right palm 1 20 subject-2 dog test2 value Z
+L4S112 GCGTTACACACA right palm 3 17 subject-2 cat test1 value A
+L4S137 GAACTGTATCTC right palm 4 14 subject-2 bird test2 value A
+L5S240 CTGGACTCATAG tongue 10 28 subject-2 dog test1 value A
+L6S93 GCGTTACACACA tongue 3 17 subject-2 dog test1 value Z
+L6S20 GAACTGTATCTC tongue 4 14 subject-2 bird test2 value Z
+L6S68 CTGGACTCATAG gut 10 28 subject-2 cow test1 value Z
b
diff -r cba57f5ca371 -r 4696fc685d83 test-data/ancombc.test1.table.qza
b
Binary file test-data/ancombc.test1.table.qza has changed