| Previous changeset 1:7a9158bb6f98 (2017-08-07) Next changeset 3:2754990eb583 (2017-09-05) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/kallisto/ commit fc0426e784d0eb5ca37484d2d0c088da289996dd |
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added:
test-data/kallisto_pseudo_out1.cells test-data/kallisto_pseudo_out1.ec test-data/kallisto_pseudo_out1.tab test-data/kallisto_pseudo_out2.ec test-data/kallisto_pseudo_out2.tab test-data/kallisto_pseudo_out3.ec test-data/kallisto_pseudo_out3.tab test-data/kallisto_pseudo_out4.ec test-data/kallisto_pseudo_out4.tab test-data/kallisto_pseudo_out5.bam test-data/kallisto_pseudo_out5.ec test-data/kallisto_pseudo_out5.tab test-data/kallisto_pseudo_out6.bam test-data/kallisto_pseudo_out6.cells test-data/kallisto_pseudo_out6.ec test-data/kallisto_pseudo_out6.tab test-data/mm10_chrM.umi test-data/sacCer2_chrM.umi test-data/sacCer2_chrM_R.fq.gz |
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| diff -r 7a9158bb6f98 -r 552ef00aba90 test-data/kallisto_pseudo_out1.cells --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/kallisto_pseudo_out1.cells Tue Aug 22 04:15:40 2017 -0400 |
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| @@ -0,0 +1,2 @@ +cell1 +cell1 |
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| diff -r 7a9158bb6f98 -r 552ef00aba90 test-data/kallisto_pseudo_out1.ec --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/kallisto_pseudo_out1.ec Tue Aug 22 04:15:40 2017 -0400 |
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| @@ -0,0 +1,1 @@ +0 0 |
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| diff -r 7a9158bb6f98 -r 552ef00aba90 test-data/kallisto_pseudo_out1.tab --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/kallisto_pseudo_out1.tab Tue Aug 22 04:15:40 2017 -0400 |
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| @@ -0,0 +1,2 @@ +0 0 100 +0 1 100 |
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| diff -r 7a9158bb6f98 -r 552ef00aba90 test-data/kallisto_pseudo_out2.ec --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/kallisto_pseudo_out2.ec Tue Aug 22 04:15:40 2017 -0400 |
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| @@ -0,0 +1,1 @@ +0 0 |
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| diff -r 7a9158bb6f98 -r 552ef00aba90 test-data/kallisto_pseudo_out2.tab --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/kallisto_pseudo_out2.tab Tue Aug 22 04:15:40 2017 -0400 |
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| @@ -0,0 +1,1 @@ +0 100 |
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| diff -r 7a9158bb6f98 -r 552ef00aba90 test-data/kallisto_pseudo_out3.ec --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/kallisto_pseudo_out3.ec Tue Aug 22 04:15:40 2017 -0400 |
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| @@ -0,0 +1,1 @@ +0 0 |
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| diff -r 7a9158bb6f98 -r 552ef00aba90 test-data/kallisto_pseudo_out3.tab --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/kallisto_pseudo_out3.tab Tue Aug 22 04:15:40 2017 -0400 |
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| @@ -0,0 +1,1 @@ +0 100 |
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| diff -r 7a9158bb6f98 -r 552ef00aba90 test-data/kallisto_pseudo_out4.ec --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/kallisto_pseudo_out4.ec Tue Aug 22 04:15:40 2017 -0400 |
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| @@ -0,0 +1,1 @@ +0 0 |
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| diff -r 7a9158bb6f98 -r 552ef00aba90 test-data/kallisto_pseudo_out4.tab --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/kallisto_pseudo_out4.tab Tue Aug 22 04:15:40 2017 -0400 |
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| @@ -0,0 +1,1 @@ +0 200 |
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| diff -r 7a9158bb6f98 -r 552ef00aba90 test-data/kallisto_pseudo_out5.bam |
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| Binary file test-data/kallisto_pseudo_out5.bam has changed |
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| diff -r 7a9158bb6f98 -r 552ef00aba90 test-data/kallisto_pseudo_out5.ec --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/kallisto_pseudo_out5.ec Tue Aug 22 04:15:40 2017 -0400 |
| b |
| @@ -0,0 +1,1 @@ +0 0 |
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| diff -r 7a9158bb6f98 -r 552ef00aba90 test-data/kallisto_pseudo_out5.tab --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/kallisto_pseudo_out5.tab Tue Aug 22 04:15:40 2017 -0400 |
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| @@ -0,0 +1,1 @@ +0 19 |
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| diff -r 7a9158bb6f98 -r 552ef00aba90 test-data/kallisto_pseudo_out6.bam |
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| Binary file test-data/kallisto_pseudo_out6.bam has changed |
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| diff -r 7a9158bb6f98 -r 552ef00aba90 test-data/kallisto_pseudo_out6.cells --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/kallisto_pseudo_out6.cells Tue Aug 22 04:15:40 2017 -0400 |
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| @@ -0,0 +1,2 @@ +cell1 +cell1 |
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| diff -r 7a9158bb6f98 -r 552ef00aba90 test-data/kallisto_pseudo_out6.ec --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/kallisto_pseudo_out6.ec Tue Aug 22 04:15:40 2017 -0400 |
| b |
| @@ -0,0 +1,1 @@ +0 0 |
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| diff -r 7a9158bb6f98 -r 552ef00aba90 test-data/kallisto_pseudo_out6.tab --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/kallisto_pseudo_out6.tab Tue Aug 22 04:15:40 2017 -0400 |
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| @@ -0,0 +1,2 @@ +0 0 18 +0 1 18 |
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| diff -r 7a9158bb6f98 -r 552ef00aba90 test-data/mm10_chrM.umi --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/mm10_chrM.umi Tue Aug 22 04:15:40 2017 -0400 |
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| @@ -0,0 +1,100 @@ +CTAGATTTCC +ATCAACAACC +AACTAAATTT +TTGTAATGCT +TCCTCCAGCG +CTCTAAGTGG +CCAAAAAAAC +TTGTCTTCAT +ATAAGTGGGA +TGACACATGA +TTACTTCACC +GATTTTGGGA +CTAGGAGACC +TCCCCAAGCA +CTCAACTATA +GCGGGGTTCT +ACCTAAACAC +ACCTTGTTCC +CTACGAATAT +TTACTTGCTT +AGACTGTGAA +TCTGACATAC +ATTAGTTCAG +AAAATAGTGA +TGATCCAATA +CAGGTTAAGA +TATCGAAGAG +AACCATTAAT +ATTATAACTT +GTAAATAAGA +AAACAATTTC +ATTGAAGGAA +CCCACTACTT +TCTGTTCTTA +CCTGTACACT +CAGAGCGTTC +TGTTTGTGAT +GCGTAATAGA +ATATAATATT +AAACACCCCA +AAGTTTGAAT +ACACATACAA +GCAAACAAGA +TTCTATATGT +TGATAAATAT +TAGTTGGTTT +CTAAACTCAA +GTTGGTAAAT +ATAAGGCTAT +AATCAGAAGT +AATAACAGCC +TTAGGTGGTT +TTCAAAATTC +AACATTAATA +TAGTATGAGT +ACACATCTGT +ATTCCACTTA +TTATTCTTTA +CAACCAACAA +ATAACCATTG +TCAGGATGAG +TGCCTTCCAG +GGCGTAAAAC +GTATGCTGTA +TTTTGGATTA +GATGTCTTGA +CTTGAAACCA +CCTATGTTCA +TTTATTTAGA +AAAATTATCA +CTCATACATC +AACAAACGAA +ACAAATATTA +AGTACATAAA +GATTAGAATG +ATAGCAACAC +AGCTTAATAT +AGGATAAGCA +CTTTACTGGG +TGCTCTGGCT +GTAGTAGCCC +TAATCTATAT +TACTAGTAAA +GTAATTGATT +TCTCCCAAAC +GGTCTTATCC +ATAAATCAAG +GTTTTGGTTC +GATTAGGAAT +TTATGGAGTT +TTTGACTGAT +AAACGAGGGT +TCGCCCTCCC +TTAGGCGATG +TACTTATTAT +GATTATAGTA +CTAACATTAC +TCACCCAAAA +TTATTCCACT +TAACATTGTT |
| b |
| diff -r 7a9158bb6f98 -r 552ef00aba90 test-data/sacCer2_chrM.umi --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/sacCer2_chrM.umi Tue Aug 22 04:15:40 2017 -0400 |
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| @@ -0,0 +1,198 @@ +TAGGCCGTTA +CATCCAATGG +ACCAATGGTT +TGAAAACCAA +TTATATGACT +TTGTTGTTGT +CTCCCCCATG +GAAATGACTC +CCAAACTATG +GCAGATCGTT +AGCCTCCCCT +TTAACAGGCC +TACAAACAGC +TGTAGGCGAA +AATGTTGTTC +ACTGAAGCAT +ATGACTTGTT +TTTTCTCTTT +ATTATTTTCG +GGGTTCTGTG +GTCACATATT +TCCAATTCCT +ATGGTTTGAA +CAGCGTTACC +AGTTTTTCGT +CTGGACCTTC +ATATTATTAG +AGACCACCAA +GAAAATGAAG +AGTTTTGCTA +TGCTCAAATT +AATTCTTTCC +TTCCCAGCTT +CGATAACGGA +CTATCCAGGC +AGAGATCAAA +AATTCTCAGG +TGTCCTCTTG +ATTAATATTC +TCCAACCTGC +TGTTTGTGAA +ACGAGAATCT +AGAACAGAAG +AGTGATGTTC +ATCAGCCCCA +CTCGATGATC +GTCTTCTTTA +GTGGTGGTAA +AGAAGAATCT +AAGGAGGGGT +CATTGATTAA +ACCTGCAGAC +GCATTCCGCT +TAGTTTGAGA +TTAATTTTCT +TCCCTTATCT +TGCTAGCAAG +TCATGCGCTT +TTCTCTCAAA +ATGGATGTGT +TAAAAGAAAT +ATGTCCAGTG +TATTGGTGAA +TTGTAAGGAA +GCACTCATCC +GACTTGAAAT +ACGAACGATA +TTCGAACATT +GACGTTGAAT +AAACAGGACT +ACCAAGAATT +AAGGAAGCCC +TGAATTTGAG +AGTGCCTTAC +AATAGCACGG +GTGACATAGA +TAACGAATTC +GAGAAAAAGC +TGCGTGGATT +CAAACGTATT +GCGAGGTTCT +AGGGTGATTT +CATGGATTAA +GACAGGGTCT +TCTTAAAGTC +TAACCCGGCT +GCGCTTTACA +TATCGTAGTT +AATGCTAGAA +CTACAGGCGG +AGTCATGAAT +GGCAGGAGAA +AATTTTAGAG +GGTGGCGGCA +TATGTTTATG +GTGAGCCCTT +GCACCAAGAG +CAATCTACCG +GCACAAGCGA +ACAGCTCGAA +TTTTCAGCAC +TCAGCATCGT +GGTGGAGGTG +AGGAAAGTCG +ACCTGCTTAT +TCAACCAATT +ATTAACTACT +ATTTTGGCCA +CGGTGAAGAT +CTATGAATCA +AAAGCCTTTG +ATCATCGGTC +TAATCCTTCA +GATGATTTCT +ATCCACTGTT +ATCCATCACC +GACTGTAAAG +TTTTTTTCAC +TACAAGACTA +GAGAGCTACC +ATGGGCGGAG +GACATGAAGC +ATGGTACCAC +TTTGATTAGG +TTTGACGGAA +TACTAAGCAA +AGTCGGCCAA +ATCATTATTT +CTTGGGCGAT +GTTGACATTT +ATTCAAATCA +CCATAGGAGT +AAGTTACCTC +AAATATGTCA +TTAAGGGATG +TTTTTTTCAT +ACTCTACACA +ATGGGCCTTT +CCCCTGTTGC +TAAAAGAACG +GTTCGCATTG +AACATCATTG +CCAAATTGAT +TTCGTATTTT +GTTGCTCAAT +TTTTATACGT +AGATTAAACC +TCCCAATTTT +TATTGGAATG +AACGAGGTGA +ATTCAGTTGC +ACAAATTTTT +CTGACGAGCT +TGGTTGCTCT +TTCTATTAAG +AGAAAATATT +AACCACGTCC +ACATCAGAGC +AACGTTCATG +AATGCATGCG +TTGTTAGGTA +GCTAAATTCA +AAACATGGTT +TAAGACTGAA +TGCACTTGGC +ACGTCATCTG +TAAGTCAGAA +AGTGGAAGGA +TCAAGTGTTG +CTTACAAGGG +TTCCACTCGC +CATAAACATT +CATGGTATAT +GAAAAAGTAT +AAGAAAGGTG +CATAACACCT +TAATGATAGG +TCTCTTTTTC +CCAAACTTTT +GGTCGAGTAC +GCCCTCGTTT +ATTATAGGGT +CAACAAAGAT +AGTTGAGAAT +ATCCTTGACT +TCCTTAGGTT +AGACTTAATC +ATGAGAAGTC +GCAATCTCCC +GGACTACCTT +TTGGGTAACG +GAATATTTAC +AGAGGCAGAT +CTTTTGACCA +GGGCAGCAAC +ATTGGAGGGT +ACGTTCTTGA +GCACGTAACC |
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| diff -r 7a9158bb6f98 -r 552ef00aba90 test-data/sacCer2_chrM_R.fq.gz |
| b |
| Binary file test-data/sacCer2_chrM_R.fq.gz has changed |