| Previous changeset 6:288f7f69fe25 (2019-09-06) Next changeset 8:3da72230c066 (2021-10-14) |
|
Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/seqtk commit 35c8480f525d211d5e9996086c60b2c6d4f89146" |
|
modified:
macros.xml seqtk_mergefa.xml seqtk_mergepe.xml |
| b |
| diff -r 288f7f69fe25 -r 58c8ece95b53 macros.xml --- a/macros.xml Fri Sep 06 09:10:07 2019 -0400 +++ b/macros.xml Tue Sep 10 13:58:48 2019 -0400 |
| [ |
| @@ -26,7 +26,7 @@ <param name="in_file" type="data" format="fasta,fastq,fasta.gz,fastq.gz" label="Input FASTA/Q file"/> </xml> <token name="@CONDITIONAL_GZIP_OUT@"><![CDATA[ - #echo "| pigz --no-name --no-time" if $in_file.is_of_type('fasta.gz', 'fastq.gz') else "" # > '$default' + #echo "| pigz -p ${GALAXY_SLOTS:-1} --no-name --no-time" if $in_file.is_of_type('fasta.gz', 'fastq.gz') else "" # > '$default' ]]></token> <token name="@ATTRIBUTION@"><![CDATA[ **Attribution** |
| b |
| diff -r 288f7f69fe25 -r 58c8ece95b53 seqtk_mergefa.xml --- a/seqtk_mergefa.xml Fri Sep 06 09:10:07 2019 -0400 +++ b/seqtk_mergefa.xml Tue Sep 10 13:58:48 2019 -0400 |
| b |
| @@ -15,7 +15,7 @@ $h '$in_fa1' '$in_fa2' -#echo "| pigz --no-name --no-time" if $in_fa1.is_of_type('fasta.gz', 'fastq.gz') else "" # > '$default' +#echo "| pigz -p ${GALAXY_SLOTS:-1} --no-name --no-time" if $in_fa1.is_of_type('fasta.gz', 'fastq.gz') else "" # > '$default' ]]></command> <inputs> <param name="in_fa1" type="data" format="fasta,fastq,fasta.gz,fastq.gz" label="Input FASTA/Q file #1"/> |
| b |
| diff -r 288f7f69fe25 -r 58c8ece95b53 seqtk_mergepe.xml --- a/seqtk_mergepe.xml Fri Sep 06 09:10:07 2019 -0400 +++ b/seqtk_mergepe.xml Tue Sep 10 13:58:48 2019 -0400 |
| b |
| @@ -10,7 +10,7 @@ seqtk mergepe '$in_fq1' '$in_fq2' - #echo "| pigz --no-name --no-time" if $in_fq1.is_of_type('fasta.gz', 'fastq.gz') else "" # > '$default' + #echo "| pigz -p ${GALAXY_SLOTS:-1} --no-name --no-time" if $in_fq1.is_of_type('fasta.gz', 'fastq.gz') else "" # > '$default' ]]></command> <inputs> <param name="in_fq1" type="data" format="fasta,fastq,fasta.gz,fastq.gz" label="Input FASTA/Q file #1"/> |