| Previous changeset 3:d054d95585b1 (2014-02-21) Next changeset 5:bd84ff27bc16 (2018-02-26) |
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Commit message:
planemo upload commit 1869970193a1878acbc0f8a79b81dd02b37f1dc1 |
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modified:
lastz_wrapper.xml tool_dependencies.xml |
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| diff -r d054d95585b1 -r 60afcc2c1d05 lastz_wrapper.xml --- a/lastz_wrapper.xml Fri Feb 21 14:25:04 2014 -0500 +++ b/lastz_wrapper.xml Fri Oct 09 17:48:16 2015 -0400 |
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| @@ -101,12 +101,12 @@ <option value="nochain">No</option> <option value="chain">Yes</option> </param> - <param name="O" type="integer" size="5" value="400" label="Gap opening penalty"/> - <param name="E" type="integer" size="5" value="30" label="Gap extension penalty"/> - <param name="X" type="integer" size="5" value="910" label="X-drop threshold"/> - <param name="Y" type="integer" size="5" value="9370" label="Y-drop threshold"/> - <param name="K" type="integer" size="5" value="3000" label="Set the threshold for HSPs (ungapped extensions scoring lower are discarded)"/> - <param name="L" type="integer" size="5" value="3000" label="Set the threshold for gapped alignments (gapped extensions scoring lower are discarded)"/> + <param name="O" type="integer" value="400" label="Gap opening penalty"/> + <param name="E" type="integer" value="30" label="Gap extension penalty"/> + <param name="X" type="integer" value="910" label="X-drop threshold"/> + <param name="Y" type="integer" value="9370" label="Y-drop threshold"/> + <param name="K" type="integer" value="3000" label="Set the threshold for HSPs (ungapped extensions scoring lower are discarded)"/> + <param name="L" type="integer" value="3000" label="Set the threshold for gapped alignments (gapped extensions scoring lower are discarded)"/> <param name="entropy" type="select" label="Involve entropy when filtering HSPs?"> <option value="noentropy">No</option> <option value="entropy">Yes</option> @@ -119,13 +119,13 @@ <option value="yes">Yes</option> </param> <when value="yes"> - <param name="ref_name" type="text" size="25" value="Type sequence name here" label="Enter name for the Reference sequence"/> + <param name="ref_name" type="text" value="Type sequence name here" label="Enter name for the Reference sequence"/> </when> <when value="no" /> </conditional> - <param name="min_ident" type="integer" size="3" value="0" label="Do not report matches below this identity (%)"/> - <param name="max_ident" type="integer" size="3" value="100" label="Do not report matches above this identity (%)"/> - <param name="min_cvrg" type="integer" size="3" value="0" label="Do not report matches that cover less than this percentage of each read"/> + <param name="min_ident" type="integer" value="0" label="Do not report matches below this identity (%)"/> + <param name="max_ident" type="integer" value="100" label="Do not report matches above this identity (%)"/> + <param name="min_cvrg" type="integer" value="0" label="Do not report matches that cover less than this percentage of each read"/> <param name="unmask" type="select" label="Convert lowercase bases to uppercase"> <option value="yes">Yes</option> <option value="no">No</option> |
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| diff -r d054d95585b1 -r 60afcc2c1d05 tool_dependencies.xml --- a/tool_dependencies.xml Fri Feb 21 14:25:04 2014 -0500 +++ b/tool_dependencies.xml Fri Oct 09 17:48:16 2015 -0400 |
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| @@ -1,6 +1,6 @@ <?xml version="1.0"?> <tool_dependency> <package name="lastz" version="1.02.00"> - <repository changeset_revision="1d4a5e764543" name="package_lastz_1_02_00" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" /> + <repository changeset_revision="1d4a5e764543" name="package_lastz_1_02_00" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> </tool_dependency> |