| Next changeset 1:0d9cd7487cc9 (2015-12-17) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6 commit 1494217502875b97dc8d4c0580c279d444e2ca89 |
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added:
tool_dependencies.xml |
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| diff -r 000000000000 -r 6d6cca69a34a tool_dependencies.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Mon Nov 16 09:43:21 2015 -0500 |
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| @@ -0,0 +1,55 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="bowtie2" version="2.2.6"> + <install version="1.0"> + <actions_group> + <actions os="linux" architecture="x86_64"> + <action md5sum="074884c2989437491685cfdec649d424" type="download_by_url">http://downloads.sourceforge.net/project/bowtie-bio/bowtie2/2.2.6/bowtie2-2.2.6-linux-x86_64.zip</action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR</destination_directory> + </action> + </actions> + <actions os="darwin" architecture="x86_64"> + <action md5sum="2ff07b1358844bda4b2b1055507fee5b" type="download_by_url">http://downloads.sourceforge.net/project/bowtie-bio/bowtie2/2.2.6/bowtie2-2.2.6-macos-x86_64.zip</action> + <action type="move_directory_files"> + <source_directory>.</source_directory> + <destination_directory>$INSTALL_DIR</destination_directory> + </action> + </actions> + <actions> + <action md5sum="6a67cf80f4551e24c5e1430a2b2e305a" type="download_by_url">http://downloads.sourceforge.net/project/bowtie-bio/bowtie2/2.2.6/bowtie2-2.2.6-source.zip</action> + <action type="shell_command">make</action> + <action type="move_file"> + <source>bowtie2</source> + <destination>$INSTALL_DIR/bin</destination> + </action> + <action type="move_file"> + <source>bowtie2-build</source> + <destination>$INSTALL_DIR/bin</destination> + </action> + <action type="move_file"> + <source>bowtie2-inspect</source> + <destination>$INSTALL_DIR/bin</destination> + </action> + <action type="move_file"> + <source>bowtie</source> + <destination>$INSTALL_DIR/bin</destination> + </action> + <action type="move_file"> + <source>bowtie-build</source> + <destination>$INSTALL_DIR/bin</destination> + </action> + <action type="move_file"> + <source>bowtie-inspect</source> + <destination>$INSTALL_DIR/bin</destination> + </action> + </actions> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable> + </action> + </actions_group> + </install> + <readme></readme> + </package> +</tool_dependency> |