Repository package_bowtie_2_2_6
Owner: iuc
Synopsis: Contains a tool dependency definition that downloads and compiles version 2.2.6 of bowtie2.
Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to
long reference sequences. It is particularly good at aligning reads of about 50 up
to 100s or 1,000s of characters, and particularly good at aligning to relatively long
(e.g. mammalian) genomes. Bowtie 2 indexes the genome with an FM Index to keep its
memory footprint small: for the human genome, its memory footprint is typically around
3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes. 

http://bowtie-bio.sourceforge.net/bowtie2/index.shtml
Type: tool_dependency_definition
Revision: 1:0d9cd7487cc9
This revision can be installed: True
Times cloned / installed: 4107
Dependencies of this repository

Name Version Type
bowtie2 2.2.6 package

Categories
Tool Dependency Packages - Repositories that contain third-party tool dependency package installation definitions