| Previous changeset 3:85263dc18cec (2018-05-08) Next changeset 5:b8658f852bc7 (2020-01-30) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/fastx_toolkit/fastx_clipper commit 3953b65f6b1c0336e9cadbe0792a5d3b14b5643a |
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modified:
fastx_clipper.xml macros.xml |
| b |
| diff -r 85263dc18cec -r 736b8f6ee456 fastx_clipper.xml --- a/fastx_clipper.xml Tue May 08 13:27:25 2018 -0400 +++ b/fastx_clipper.xml Wed Aug 22 11:05:15 2018 -0400 |
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| @@ -1,4 +1,4 @@ -<tool id="cshl_fastx_clipper" name="Clip" version="1.0.2"> +<tool id="cshl_fastx_clipper" name="Clip" version="1.0.3"> <description>adapter sequences</description> <macros> <import>macros.xml</import> @@ -14,6 +14,7 @@ $KEEP_N $DISCARD_OPTIONS @FQQUAL@ +@GZIP@ ]]></command> <inputs> |
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| diff -r 85263dc18cec -r 736b8f6ee456 macros.xml --- a/macros.xml Tue May 08 13:27:25 2018 -0400 +++ b/macros.xml Wed Aug 22 11:05:15 2018 -0400 |
| [ |
| @@ -2,7 +2,7 @@ <macros> <token name="@CATS@"> #if $input.is_of_type('fasta.gz', 'fastqsanger.gz', 'fastqsolexa.gz', 'fastqillumina.gz'): - zcat -f '$input' | + gunzip -c -f '$input' | #elif $input.is_of_type('fastqsanger.bz2', 'fastqsolexa.bz2', 'fastqillumina.bz2'): bzcat -f '$input' | #else: @@ -18,6 +18,13 @@ #end if ]]> </token> + <token name="@GZIP@"> + <![CDATA[ + #if $input.is_of_type('fasta.gz', 'fastqsanger.gz', 'fastqsolexa.gz', 'fastqillumina.gz'): + -z + #end if + ]]> + </token> <xml name="requirements"> <requirements> <requirement type="package" version="@VERSION@">fastx_toolkit</requirement> |