| Previous changeset 3:b03007bc0f05 (2019-02-28) Next changeset 5:1f6fe9dc5490 (2019-03-04) |
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Commit message:
planemo upload for repository https://github.com/dfornika/galaxytools/tree/master/data_managers/data_manager_build_kraken2_database/ commit f05f93ee024df8b38efa1c92db9785d52c726f85-dirty |
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modified:
data_manager/kraken2_build_custom.py data_manager/kraken2_build_custom.xml |
| b |
| diff -r b03007bc0f05 -r 988c436ad798 data_manager/kraken2_build_custom.py --- a/data_manager/kraken2_build_custom.py Thu Feb 28 18:55:04 2019 -0500 +++ b/data_manager/kraken2_build_custom.py Fri Mar 01 14:01:57 2019 -0500 |
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| @@ -34,7 +34,7 @@ '--db', database_name ] - run(args, target_directory) + # run(args, target_directory) args = [ 'kraken2-build', |
| b |
| diff -r b03007bc0f05 -r 988c436ad798 data_manager/kraken2_build_custom.xml --- a/data_manager/kraken2_build_custom.xml Thu Feb 28 18:55:04 2019 -0500 +++ b/data_manager/kraken2_build_custom.xml Fri Mar 01 14:01:57 2019 -0500 |
| [ |
| @@ -7,13 +7,13 @@ <version_command>kraken2 -version | head -n 1 | awk '{print $NF}'</version_command> <command detect_errors="exit_code"> <![CDATA[ - python '$__tool_directory__/kraken2_build_standard.py' + python '$__tool_directory__/kraken2_build_custom.py' '${out_file}' --threads \${GALAXY_SLOTS:-1} - --fasta ${input_fasta} --kmer-len ${kmer_len} --minimizer-len ${minimizer_len} --minimizer-spaces ${minimizer_spaces} + --fasta ${input_fasta} ]]> </command> <inputs> |