| Previous changeset 12:2263989660f5 (2023-05-15) Next changeset 14:94b8c6013083 (2023-08-28) |
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Commit message:
planemo upload for repository https://github.com/usegalaxy-au/tools-au commit 2d431863824af49c82ff2ae318abee3b16141a4e |
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modified:
cactus_cactus.xml macros.xml |
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| diff -r 2263989660f5 -r 9eeb13a92d79 cactus_cactus.xml --- a/cactus_cactus.xml Mon May 15 04:34:02 2023 +0000 +++ b/cactus_cactus.xml Wed Jul 05 03:24:58 2023 +0000 |
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| @@ -24,20 +24,22 @@ #if $aln_mode.aln_mode_select == 'intraspecies': ## Run cactus-pangenome + ## --reference should be the first argument + ## https://github.com/ComparativeGenomicsToolkit/cactus/issues/1093#issuecomment-1620088688 cactus-pangenome + --reference $aln_mode.ref_level --binariesMode local - --maxCores \${GALAXY_SLOTS:-4} + --maxCores \${GALAXY_SLOTS:-4} --maxMemory \${GALAXY_MEMORY_MB:-8192}M --outDir ./ --outName alignment - --reference $aln_mode.ref_level - ./jobStore + jobStore seqfile.txt #else if $aln_mode.aln_mode_select == 'interspecies': ## Run cactus normally cactus --binariesMode local - --maxCores \${GALAXY_SLOTS:-4} + --maxCores \${GALAXY_SLOTS:-4} --maxMemory \${GALAXY_MEMORY_MB:-8192}M --workDir ./ jobStore @@ -177,12 +179,12 @@ </repeat> <output name="out_hal"> <assert_contents> - <has_size value="7420424" delta="200000" /> + <has_size value="6235006" delta="200000" /> </assert_contents> </output> <output name="out_gfa"> <assert_contents> - <has_size value="5786846" delta="200000" /> + <has_size value="5771414" delta="200000" /> </assert_contents> </output> </test> |
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| diff -r 2263989660f5 -r 9eeb13a92d79 macros.xml --- a/macros.xml Mon May 15 04:34:02 2023 +0000 +++ b/macros.xml Wed Jul 05 03:24:58 2023 +0000 |
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| @@ -1,5 +1,5 @@ <macros> - <token name="@TOOL_VERSION@">2.5.1</token> + <token name="@TOOL_VERSION@">2.6.4</token> <token name="@VERSION_SUFFIX@">1</token> <token name="@PROFILE@">20.09</token> <xml name="requirements"> |