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Repository cactus_cactus
Name: cactus_cactus
Owner: galaxy-australia
Synopsis: Cactus from the cactus suite
Cactus is a reference-free whole-genome multiple alignment program
Content homepage: https://github.com/ComparativeGenomicsToolkit/cactus
Development repository: https://github.com/galaxyproject/tools-iuc/tree/main/tools/cactus
Link to this repository: https://toolshed.g2.bx.psu.edu/view/galaxy-australia/cactus_cactus/098506c54016
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/galaxy-australia/cactus_cactus
Type: unrestricted
Revision: 15:098506c54016
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Times cloned / installed: 318

Repository README files - may contain important installation or license information

Readme files

Cactus

This suite contains a wrapper for the Cactus whole-genome aligner and another wrapper for exporting the data it generates.

Requirements

Cactus uses a lot of RAM. We have tested it on Galaxy using 24 GB of RAM for a progressive alignment of three chromosome-level, 150 megabase genomes.

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
whole-genome multiple sequence alignment 2.7.1+galaxy0 20.09

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis