| Previous changeset 7:007d99e2ae91 (2016-04-04) Next changeset 9:1c6c8591f760 (2016-04-04) |
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modified:
chipsequtil/map_to_known_genes.xml |
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added:
chipsequtil/._map_to_known_genes.py chipsequtil/._map_to_known_genes.xml |
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| diff -r 007d99e2ae91 -r a30aa2806375 chipsequtil/._map_to_known_genes.py |
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| Binary file chipsequtil/._map_to_known_genes.py has changed |
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| diff -r 007d99e2ae91 -r a30aa2806375 chipsequtil/._map_to_known_genes.xml |
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| Binary file chipsequtil/._map_to_known_genes.xml has changed |
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| diff -r 007d99e2ae91 -r a30aa2806375 chipsequtil/map_to_known_genes.xml --- a/chipsequtil/map_to_known_genes.xml Mon Apr 04 14:56:57 2016 -0400 +++ b/chipsequtil/map_to_known_genes.xml Mon Apr 04 15:02:03 2016 -0400 |
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| @@ -23,7 +23,6 @@ <param name="knownGeneFile" type="data" label="knownGene file" help="" optional="false" /> <param name="knownGeneRef" type="data" label="knownGene xRef file" help="" optional="false" /> <param name="macsPeaksFile" type="data" label="Peaks File" help="" optional="false" /> - <param name="peaksOutput" type="text" label="Output filename" help="filename to output mapped peaks to" optional="false" /> <param name="upst_win" type="integer" label="Upstream Window" help="Window width in base pairs to consider promoter region [default: %default]" optional="false" value="5500" /> <param name="dnst_win" type="integer" label="Downstream Window" help="Window width in base pairs to consider downstream region [default: %default]" optional="false" value="2500" /> @@ -39,7 +38,7 @@ <param name="intergenic" checked="false" label="Write intergenic peaks to the gene file as well with None as gene ID" type="boolean" truevalue="--intergenic" falsevalue="" help="" /> </inputs> <outputs> - <data format="txt" hidden="false" name="default"/> + <data format="txt" hidden="false" name="peaksOutput"/> </outputs> <help></help> </tool> |