Repository 'chipsequtil'
hg clone https://toolshed.g2.bx.psu.edu/repos/alenail/chipsequtil

Changeset 25:a5df36602f21 (2016-04-13)
Previous changeset 24:d9e6a1c66e76 (2016-04-13) Next changeset 26:5590ffd19524 (2016-04-13)
Commit message:
Uploaded
modified:
chipsequtil/pieplot_macs/pieplots_macs.xml
added:
chipsequtil/map_to_known_genes/._map_to_known_genes.py
chipsequtil/map_to_known_genes/._map_to_known_genes.xml
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diff -r d9e6a1c66e76 -r a5df36602f21 chipsequtil/map_to_known_genes/._map_to_known_genes.py
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Binary file chipsequtil/map_to_known_genes/._map_to_known_genes.py has changed
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diff -r d9e6a1c66e76 -r a5df36602f21 chipsequtil/map_to_known_genes/._map_to_known_genes.xml
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Binary file chipsequtil/map_to_known_genes/._map_to_known_genes.xml has changed
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diff -r d9e6a1c66e76 -r a5df36602f21 chipsequtil/pieplot_macs/pieplots_macs.xml
--- a/chipsequtil/pieplot_macs/pieplots_macs.xml Wed Apr 13 17:41:53 2016 -0400
+++ b/chipsequtil/pieplot_macs/pieplots_macs.xml Wed Apr 13 17:52:26 2016 -0400
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@@ -8,7 +8,7 @@
     <requirement type="package">pandas</requirement>
   </requirements>
   <command interpreter="python">
-    pieplots_macs.py genefile $genefilepeakfile $peakfile $MACSoutfile $out
+    pieplots_macs.py --genefile $genefile --peakfile $peakfile $MACS --outfile $out
   </command>
   <inputs>
     <param name="genefile" type="data" label="Gene file (map_peaks_to_genes)" help="" optional="false" />