| Previous changeset 0:7608209110d3 (2021-09-06) Next changeset 2:98fe794d2ec0 (2022-09-04) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/deepvariant commit ce3024e2098c50a93ea8a7fc120a40a570fd0c53" |
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modified:
deepvariant.xml macros.xml |
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| diff -r 7608209110d3 -r b778a18bd878 deepvariant.xml --- a/deepvariant.xml Mon Sep 06 17:34:08 2021 +0000 +++ b/deepvariant.xml Fri Oct 01 07:46:42 2021 +0000 |
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| @@ -31,7 +31,7 @@ #else if $regions_conditional.regions_option == 'bed' --regions region.bed #end if - --call_variants_extra_args="use_openvino=true" ## Setting this will use OpenVINO on Intel CPUs, which empirically reduces call_variants runtime by 15%-25%. + ##--call_variants_extra_args="use_openvino=true" ## Setting this will use OpenVINO on Intel CPUs, which empirically reduces call_variants runtime by 15%-25%. --num_shards=\${GALAXY_SLOTS:-2} && gunzip './output.vcf.gz' #if $output_gvcf @@ -56,7 +56,7 @@ <param name="history_item" type="data" format="fasta" label="Reference genome" help="A reference genome in FASTA format" /> </when> </conditional> - <param argument="--reads" type="data" format="BAM" label="BAM file" help="An aligned reads files for child and one or two parents in BAM format. The reads must be aligned to the reference genome" /> + <param argument="--reads" type="data" format="BAM" label="BAM file" help="An aligned reads file in BAM format. The reads must be aligned to the reference genome" /> <param argument="--model_type" type="select" label="Model type" help="Type of model to use for variant calling"> <option value="WGS">WGS: Illumina whole genome sequencing</option> <option value="WES">WES: Illumina whole exome sequencing</option> |
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| diff -r 7608209110d3 -r b778a18bd878 macros.xml --- a/macros.xml Mon Sep 06 17:34:08 2021 +0000 +++ b/macros.xml Fri Oct 01 07:46:42 2021 +0000 |
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| @@ -1,6 +1,6 @@ <macros> <token name="@TOOL_VERSION@">1.2.0</token> - <token name="@SUFFIX_VERSION@">0</token> + <token name="@SUFFIX_VERSION@">1</token> <xml name="edam_ontology"> <edam_topics> <edam_topic>topic_0199</edam_topic> |