Repository revision
repository tip
Select a revision to inspect and download versions of Galaxy utilities from this repository.

Repository deepvariant
Name: deepvariant
Owner: iuc
Synopsis: DeepVariant is a deep learning-based variant caller
DeepVariant is a deep learning-based variant caller that takes aligned reads (in BAM 
or CRAM format), produces pileup image tensors from them, classifies each tensor using 
a convolutional neural network, and finally reports the results in a standard VCF or gVCF file.
Type: unrestricted
Revision: 4:63b68fe4af85
This revision can be installed: True
Times cloned / installed: 305

Contents of this repository

Name Description Version Minimum Galaxy Version
deep learning-based variant caller 1.5.0+galaxy1 20.01

Variant Analysis - Tools for single nucleotide polymorphism data such as WGA