| Previous changeset 27:92c5ecb025b6 (2019-06-05) Next changeset 29:b3d2d0a771e1 (2019-06-07) |
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Commit message:
Uploaded |
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modified:
Tryp_V_T.py |
| b |
| diff -r 92c5ecb025b6 -r be77587bdfda Tryp_V_T.py --- a/Tryp_V_T.py Wed Jun 05 16:17:30 2019 -0400 +++ b/Tryp_V_T.py Thu Jun 06 08:21:58 2019 -0400 |
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| @@ -147,6 +147,8 @@ b_df.sort_values(by=['qaccver']) b_df.to_csv(test_name + '_transcript.csv') + b_df.to_csv(html_resource+'/'+test_name + '_transcript.csv') + return b_df @@ -228,7 +230,7 @@ imgString = r"<img src = '"+ tdict['name']+"_phylotypes.png' alt='Bar chart of phylotype variation' style='max-width:100%'><br><br>" htmlString += imgString - with open(tdict['html_resource']+'/'+tdict['html_file'], "w") as htmlfile: + with open(+tdict['html_file'], "w") as htmlfile: htmlfile.write(htmlString) @@ -279,6 +281,9 @@ # print(FPKMsum2_df) FPKMsum2_df.to_csv('FPKM_sum2.csv') # in case more than one entry for a particular phylotype + htmlres = tdict['html_resource'] + FPKMsum2_df.to_csv(htmlres+'/FPKM_sum2.csv') # in case more than one entry for a particular phylotype + return FPKMsum_df, FPKMsum2_df |