| Previous changeset 26:7983a9305b53 (2019-06-05) Next changeset 28:be77587bdfda (2019-06-06) |
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Commit message:
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modified:
Tryp_V_T.py |
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| diff -r 7983a9305b53 -r 92c5ecb025b6 Tryp_V_T.py --- a/Tryp_V_T.py Wed Jun 05 05:54:10 2019 -0400 +++ b/Tryp_V_T.py Wed Jun 05 16:17:30 2019 -0400 |
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| @@ -238,16 +238,16 @@ return int(sac[1:i]) def combineFPMK(tdict): - dir_path = os.path.dirname(os.path.realpath(__file__))+'/' - - fpkm_df = pd.read_csv(dir_path+tdict['name']+'.cuff/genes.fpkm_tracking', sep='\t') + # dir_path = os.path.dirname(os.path.realpath(__file__))+'/' + cur_path = os.getcwd()+'/' + fpkm_df = pd.read_csv(cur_path+tdict['name']+'.cuff/genes.fpkm_tracking', sep='\t') #fpkm_df = pd.read_csv('genes.fpkm_tracking',sep='\t') #print(fpkm_df.head()) fpkm_df['locus'] = fpkm_df['locus'].apply(lambda names: names[:names.find(':')]) #print(fpkm_df.head()) - reducedBlast_df = pd.read_csv(dir_path + tdict['name']+'_transcript.csv') + reducedBlast_df = pd.read_csv(cur_path + tdict['name']+'_transcript.csv') # reducedBlast_df = pd.read_csv('TrinityVT_transcript.csv') saccverSet = set(reducedBlast_df['saccver']) saccverList = list(saccverSet) @@ -359,7 +359,7 @@ plt.savefig(tdict['html_resource'] + tdict['name']+"_phylotypes.png") if tdict['pdf'] == 'PDF_Yes': plt.savefig(tdict['html_resource'] + tdict['name']+"phylotypes.pdf") - plt.show() +# plt.show() pass |