| Previous changeset 19:141a337097e1 (2014-07-25) Next changeset 21:b963c4a161d2 (2014-07-25) |
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Commit message:
Uploaded |
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added:
tool_dependencies.xml |
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| diff -r 141a337097e1 -r d88fc3c0084e tool_dependencies.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Fri Jul 25 05:32:24 2014 -0400 |
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| @@ -0,0 +1,28 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="fastx_toolkit" version="0.0.13"> + <repository changeset_revision="ec66ae4c269b" name="package_fastx_toolkit_0_0_13" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" /> + </package> + <package name="bowtie" version="0.12.7"> + <repository changeset_revision="9f9f38617a98" name="package_bowtie_0_12_7" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" /> + </package> + <set_environment version="1.0"> + <environment_variable action="set_to" name="SCRIPT_PATH">$REPOSITORY_INSTALL_DIR</environment_variable> + </set_environment> + <package name="R" version="2.11.0"> + <repository changeset_revision="8d0a55bf7aaf" name="package_r_2_11_0" owner="devteam" toolshed="http://toolshed.g2.bx.psu.edu" /> + </package> + <package name="ViennaRNA" version="1.5"> + <install version="1.0"> + <actions> + <action type="download_by_url">http://web.mit.edu/seven/src/ViennaRNA-1.5beta.tar.gz</action> + <action type="shell_command">./configure --prefix=$INSTALL_DIR --datadir=$INSTALL_DIR</action> + <action type="shell_command">make</action> + <action type="shell_command">make install</action> + <action type="set_environment"> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR/bin</environment_variable> + </action> + </actions> + </install> + </package> +</tool_dependency> |