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Repository mirplant2
Name: mirplant2
Owner: big-tiandm
Synopsis: plant microRNA analysis tools
plant microRNA analysis tools
Link to this repository: https://toolshed.g2.bx.psu.edu/view/big-tiandm/mirplant2/f5a2e8308836
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/big-tiandm/mirplant2
Type: unrestricted
Revision: 53:f5a2e8308836
This revision can be installed: True
Times cloned / installed: 367
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_readline_6_2 revision 5313ca2fbce6 owned by iuc (prior install required)
Repository package_ncurses_5_9 revision 335ebf512407 owned by iuc (prior install required)
Repository package_ncurses_5_9 revision 335ebf512407 owned by iuc (prior install required)
Repository package_fastx_toolkit_0_0_13 revision ec66ae4c269b owned by devteam
Repository package_bowtie_0_12_7 revision 9f9f38617a98 owned by devteam

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
Boost-Graph 1.4_001 package
Parallel-ForkManager 1.06 package
R 3.0.1 package
SVG 2.59 package
ViennaRNA 2.1.8 package
bowtie 0.12.7 package
fastx_toolkit 0.0.13 package
SCRIPT_PATH set_environment
threads 1.96 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Plant microRNA analysis 1.0.0 any
tool for Raw data preprocess analisis, including 3' adapter triming, reads collaping, genome mapping and rfam non-miRNA analysis 1.0.0 any
tool for plant siRNA analisis 1.0.0 any
tool for plant microRNA analisis 1.0.0 any
tool for plant siRNA analisis 1.0.0 any

Categories
RNA - Utilities for RNA