| Previous changeset 48:72c9afb724a6 (2019-02-10) Next changeset 50:6c6a6a828c4f (2019-02-14) |
|
Commit message:
planemo upload for repository https://github.com/bardin-lab/readtagger/tree/master/galaxy commit faaf13601245173e1a8647ff9599a74b2f092401 |
|
modified:
add_matesequence.xml allow_dovetailing.xml bam_readtagger.xml filter_insertions.xml findcluster.xml plot_coverage.xml update_mapq.xml write_supplementary_fastq.xml |
| b |
| diff -r 72c9afb724a6 -r f4344d943248 add_matesequence.xml --- a/add_matesequence.xml Sun Feb 10 15:59:07 2019 -0500 +++ b/add_matesequence.xml Thu Feb 14 07:44:58 2019 -0500 |
| [ |
| @@ -1,7 +1,7 @@ -<tool id="add_matesequence" name="Add matesequence" version="0.4.17"> +<tool id="add_matesequence" name="Add matesequence" version="0.4.18"> <description>into tag field</description> <requirements> - <requirement type="package" version="0.4.17">readtagger</requirement> + <requirement type="package" version="0.4.18">readtagger</requirement> </requirements> <version_command>add_matesequence --version</version_command> <command detect_errors="aggressive"><![CDATA[ |
| b |
| diff -r 72c9afb724a6 -r f4344d943248 allow_dovetailing.xml --- a/allow_dovetailing.xml Sun Feb 10 15:59:07 2019 -0500 +++ b/allow_dovetailing.xml Thu Feb 14 07:44:58 2019 -0500 |
| [ |
| @@ -1,7 +1,7 @@ -<tool id="allow_dovetailing" name="Allow dovetailing" version="0.4.17"> +<tool id="allow_dovetailing" name="Allow dovetailing" version="0.4.18"> <description>modifies proper_pair flag in bam files</description> <requirements> - <requirement type="package" version="0.4.17">readtagger</requirement> + <requirement type="package" version="0.4.18">readtagger</requirement> </requirements> <command detect_errors="aggressive"><![CDATA[ allow_dovetailing -i '$input' -o '$output' |
| b |
| diff -r 72c9afb724a6 -r f4344d943248 bam_readtagger.xml --- a/bam_readtagger.xml Sun Feb 10 15:59:07 2019 -0500 +++ b/bam_readtagger.xml Thu Feb 14 07:44:58 2019 -0500 |
| [ |
| @@ -1,10 +1,10 @@ -<tool id="bam_readtagger" name="Tag alignment files" version="0.4.17"> +<tool id="bam_readtagger" name="Tag alignment files" version="0.4.18"> <description>from multiple bam files</description> <macros> <import>macros.xml</import> </macros> <requirements> - <requirement type="package" version="0.4.17">readtagger</requirement> + <requirement type="package" version="0.4.18">readtagger</requirement> </requirements> <command detect_errors="aggressive"><![CDATA[ readtagger -t '$tag_file' -s |
| b |
| diff -r 72c9afb724a6 -r f4344d943248 filter_insertions.xml --- a/filter_insertions.xml Sun Feb 10 15:59:07 2019 -0500 +++ b/filter_insertions.xml Thu Feb 14 07:44:58 2019 -0500 |
| [ |
| @@ -1,7 +1,7 @@ -<tool id="confirm_insertions" name="Confirm or discard insertions" version="0.4.17"> +<tool id="confirm_insertions" name="Confirm or discard insertions" version="0.4.18"> <description>based on softclips in control files</description> <requirements> - <requirement type="package" version="0.4.17">readtagger</requirement> + <requirement type="package" version="0.4.18">readtagger</requirement> </requirements> <version_command>confirm_insertions --version</version_command> <command detect_errors="aggressive"><![CDATA[ |
| b |
| diff -r 72c9afb724a6 -r f4344d943248 findcluster.xml --- a/findcluster.xml Sun Feb 10 15:59:07 2019 -0500 +++ b/findcluster.xml Thu Feb 14 07:44:58 2019 -0500 |
| [ |
| @@ -1,10 +1,10 @@ -<tool id="findcluster" name="Find clusters of reads" version="0.4.17"> +<tool id="findcluster" name="Find clusters of reads" version="0.4.18"> <description>in bam files</description> <macros> <import>macros.xml</import> </macros> <requirements> - <requirement type="package" version="0.4.17">readtagger</requirement> + <requirement type="package" version="0.4.18">readtagger</requirement> </requirements> <version_command>findcluster --version</version_command> <command detect_errors="aggressive"><![CDATA[ |
| b |
| diff -r 72c9afb724a6 -r f4344d943248 plot_coverage.xml --- a/plot_coverage.xml Sun Feb 10 15:59:07 2019 -0500 +++ b/plot_coverage.xml Thu Feb 14 07:44:58 2019 -0500 |
| [ |
| @@ -1,7 +1,7 @@ -<tool id="plot_coverage" name="Plot coverage" version="0.4.17"> +<tool id="plot_coverage" name="Plot coverage" version="0.4.18"> <description>as area plot between BAM files</description> <requirements> - <requirement type="package" version="0.4.17">readtagger</requirement> + <requirement type="package" version="0.4.18">readtagger</requirement> </requirements> <command detect_errors="aggressive"><![CDATA[ #import re |
| b |
| diff -r 72c9afb724a6 -r f4344d943248 update_mapq.xml --- a/update_mapq.xml Sun Feb 10 15:59:07 2019 -0500 +++ b/update_mapq.xml Thu Feb 14 07:44:58 2019 -0500 |
| [ |
| @@ -1,7 +1,7 @@ -<tool id="update_mapq" name="Update MAPQ score" version="0.4.17"> +<tool id="update_mapq" name="Update MAPQ score" version="0.4.18"> <description>of supplementary alignments</description> <requirements> - <requirement type="package" version="0.4.17">readtagger</requirement> + <requirement type="package" version="0.4.18">readtagger</requirement> </requirements> <version_command>update_mapq --version</version_command> <command detect_errors="aggressive"><![CDATA[ |
| b |
| diff -r 72c9afb724a6 -r f4344d943248 write_supplementary_fastq.xml --- a/write_supplementary_fastq.xml Sun Feb 10 15:59:07 2019 -0500 +++ b/write_supplementary_fastq.xml Thu Feb 14 07:44:58 2019 -0500 |
| [ |
| @@ -1,7 +1,7 @@ -<tool id="write_supplementary_fastq" name="Extract supplementary alignments" version="0.4.17"> +<tool id="write_supplementary_fastq" name="Extract supplementary alignments" version="0.4.18"> <description>from SAM/BAM alignment files as FASTQ</description> <requirements> - <requirement type="package" version="0.4.17">readtagger</requirement> + <requirement type="package" version="0.4.18">readtagger</requirement> </requirements> <version_command>write_supplementary_fastq --version</version_command> <command detect_errors="aggressive"><![CDATA[ |