| Previous changeset 25:c0a6a170163e (2019-06-04) Next changeset 27:92c5ecb025b6 (2019-06-05) |
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Commit message:
Uploaded |
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modified:
Tryp_V_T.py |
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| diff -r c0a6a170163e -r 7983a9305b53 Tryp_V_T.py --- a/Tryp_V_T.py Tue Jun 04 18:11:54 2019 -0400 +++ b/Tryp_V_T.py Wed Jun 05 05:54:10 2019 -0400 |
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| @@ -96,7 +96,8 @@ dir_path = os.path.dirname(os.path.realpath(__file__)) # directory of this file refPath = dir_path + "/data/Reference/" + ref + "/" + refBase # eg refPath = data/Reference/Trinity/Trinity.fasta # used for dirty # refPath = 'Trinity.fasta' # dirty one - track_df = pd.read_csv(dir_path+'/' + name + '.cuff/genes.fpkm_tracking', sep='\t') + cur_path = os.getcwd() + track_df = pd.read_csv(cur_path+'/' + name + '.cuff/genes.fpkm_tracking', sep='\t') names = track_df['locus'] # print(len(names)) # print(names[:5]) |