| Previous changeset 1:b63d6673f883 (2015-11-23) Next changeset 3:aedbdf8ce1af (2015-12-08) |
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Commit message:
planemo upload commit 670b3282d2c120882b956ad617e61369467fb0fe |
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modified:
align_families.xml duplex.xml make_families.xml |
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| diff -r b63d6673f883 -r ba2a53b970ca align_families.xml --- a/align_families.xml Mon Nov 23 22:53:35 2015 -0500 +++ b/align_families.xml Tue Nov 24 21:22:29 2015 -0500 |
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| @@ -1,6 +1,6 @@ <?xml version="1.0"?> -<tool id="align_families" name="Align families" version="0.2"> - <description>from duplex sequencing data</description> +<tool id="align_families" name="Du Novo: Align families" version="0.2"> + <description>of duplex sequencing reads</description> <requirements> <requirement type="package" version="7.221">mafft</requirement> <requirement type="package" version="0.2">duplex</requirement> |
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| diff -r b63d6673f883 -r ba2a53b970ca duplex.xml --- a/duplex.xml Mon Nov 23 22:53:35 2015 -0500 +++ b/duplex.xml Tue Nov 24 21:22:29 2015 -0500 |
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| @@ -1,6 +1,6 @@ <?xml version="1.0"?> -<tool id="duplex" name="Make consensus reads" version="0.2"> - <description>from duplex sequencing data</description> +<tool id="duplex" name="Du Novo: Make consensus reads" version="0.2"> + <description>from duplex sequencing alignments</description> <requirements> <requirement type="package" version="0.2">duplex</requirement> <requirement type="set_environment">DUPLEX_DIR</requirement> |
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| diff -r b63d6673f883 -r ba2a53b970ca make_families.xml --- a/make_families.xml Mon Nov 23 22:53:35 2015 -0500 +++ b/make_families.xml Tue Nov 24 21:22:29 2015 -0500 |
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| @@ -1,10 +1,11 @@ <?xml version="1.0"?> -<tool id="make_families" name="Make families" version="0.2"> - <description>from duplex sequencing data</description> +<tool id="make_families" name="Du Novo: Make families" version="0.2"> + <description>of duplex sequencing reads</description> <requirements> <requirement type="package" version="0.2">duplex</requirement> <requirement type="set_environment">DUPLEX_DIR</requirement> </requirements> + <!-- TODO: Add dependency on coreutils to get paste? --> <command>paste $fastq1 $fastq2 | paste - - - - | awk -f \$DUPLEX_DIR/make-barcodes.awk -v TAG_LEN=$taglen -v INVARIANT=$invariant |