| Previous changeset 39:2a5b751228a6 (2014-10-28) Next changeset 41:58b9d9a0d832 (2014-10-28) |
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Commit message:
Uploaded |
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modified:
miRPlant.xml |
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| diff -r 2a5b751228a6 -r 6a273db77b9b miRPlant.xml --- a/miRPlant.xml Tue Oct 28 01:32:32 2014 -0400 +++ b/miRPlant.xml Tue Oct 28 01:33:03 2014 -0400 |
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| @@ -6,7 +6,8 @@ <requirement type="package" version="0.12.7">bowtie</requirement> <requirement type="package" version="2.11.0">R</requirement> <requirement type="package" version="0.0.13">fastx_toolkit </requirement> - <requirement type="package" version="2.1.7">ViennaRNA</requirement> + <requirement type="package" version="1.5.0">X11</requirement> + <requirement type="package" version="2.1.8">ViennaRNA</requirement> </requirements> <!--command interpreter="perl">miPlant.pl -i $input -format $format -gfa $gfa -idx $index -pre $pre -mat $mat -rfam $rfam -idx2 $idx2 -D $D -a $a -M $M -min $min -max $max -mis $mis -e $e -f $f -v $v -r $r -dis $dis -flank $flank -mfe $mfe -t $t -o $output</command--> @@ -68,7 +69,6 @@ <param name="dis" type="integer" value="200" label="Maximal space between miRNA and miRNA*" /> <param name="flank" type="integer" value="10" label="Flank sequence length of miRNA precursor" /> <param name="mfe" type="float" value="-30" label="Maximal free energy allowed for a miRNA precursor" /> - <param name="thread" type="integer" value="1" label="number of threads" /> </inputs> <outputs> |