| Previous changeset 22:268d162b9c49 (2019-10-18) Next changeset 24:cfcf33df7fc0 (2021-10-13) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit 67da1a478db26ad45f36a673218d526f8962d72f" |
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modified:
snpEff_macros.xml snpeff_get_chr_names.xml |
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| diff -r 268d162b9c49 -r 74aebe30fb52 snpEff_macros.xml --- a/snpEff_macros.xml Fri Oct 18 06:12:18 2019 -0400 +++ b/snpEff_macros.xml Sun Jan 19 09:43:43 2020 -0500 |
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| @@ -1,6 +1,7 @@ <macros> <xml name="requirement"> <requirement type="package" version="4.3.1t">snpeff</requirement> + <yield/> </xml> <xml name="stdio"> <stdio> |
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| diff -r 268d162b9c49 -r 74aebe30fb52 snpeff_get_chr_names.xml --- a/snpeff_get_chr_names.xml Fri Oct 18 06:12:18 2019 -0400 +++ b/snpeff_get_chr_names.xml Sun Jan 19 09:43:43 2020 -0500 |
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| @@ -1,14 +1,16 @@ -<tool id="snpEff_get_chr_names" name="SnpEff chromosome-info:" version="@WRAPPER_VERSION@.galaxy1"> +<tool id="snpEff_get_chr_names" name="SnpEff chromosome-info:" version="@WRAPPER_VERSION@.galaxy2"> <description>list chromosome names/lengths</description> <macros> <import>snpEff_macros.xml</import> </macros> <requirements> - <expand macro="requirement" /> + <expand macro="requirement"> + <requirement type="package" version="5.0.1">gawk</requirement> + </expand> </requirements> <expand macro="stdio" /> <expand macro="version_command" /> - <command><![CDATA[ + <command detect_errors="exit_code"><![CDATA[ snpEff @JAVA_OPTIONS@ dump #if $snpDb.genomeSrc == 'cached': -dataDir ${snpDb.genomeVersion.fields.path} |