| Previous changeset 12:5a29ab10dba6 (2018-03-29) Next changeset 14:85ca751407c3 (2018-06-12) |
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Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tool_collections/snpeff commit 0310c734a944901fffb975937b20f55bfc1d9f46 |
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modified:
snpEff_create_db.xml |
| b |
| diff -r 5a29ab10dba6 -r f0ee2b470481 snpEff_create_db.xml --- a/snpEff_create_db.xml Thu Mar 29 20:39:49 2018 -0400 +++ b/snpEff_create_db.xml Sat Apr 07 15:46:09 2018 -0400 |
| b |
| @@ -1,4 +1,4 @@ -<tool id="snpEff_build_gb" name="SnpEff build:" version="@wrapper_version@.galaxy1"> +<tool id="snpEff_build_gb" name="SnpEff build:" version="@wrapper_version@.galaxy2"> <description> database from Genbank record</description> <macros> <import>snpEff_macros.xml</import> @@ -29,7 +29,9 @@ snpEff @java_options@ build -v -configOption '${genome_version}'.genome='${genome_version}' -configOption '${genome_version}'.codonTable='${codon_table}' - -genbank -dataDir '$snpeff_output.files_path' '$genome_version' + -genbank -dataDir '${snpeff_output.files_path}' '${genome_version}' && + echo "${genome_version}.genome : ${genome_version}" >> '${snpeff_output.files_path}'/snpEff.config && + echo "${genome_version}.codonTable : ${codon_table}" >> '${snpeff_output.files_path}'/snpEff.config ]]></command> <inputs> |