| Previous changeset 3:4383070d29ed (2020-08-14) |
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Commit message:
"planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/trinotate commit a01a55b03c6160fa665e678131f9ac1318577ba0" |
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modified:
test-data/trinotate_annotation_report.xls trinotate.xml |
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removed:
test-data/trinotate_annotation_report_minus_tmhmm_signalp.xls |
| b |
| diff -r 4383070d29ed -r 2b093007fab9 test-data/trinotate_annotation_report.xls --- a/test-data/trinotate_annotation_report.xls Fri Aug 14 16:54:16 2020 -0400 +++ b/test-data/trinotate_annotation_report.xls Sun Nov 21 17:18:27 2021 +0000 |
| [ |
| b'@@ -1,168 +1,168 @@\n #gene_id\ttranscript_id\tsprot_Top_BLASTX_hit\tRNAMMER\tprot_id\tprot_coords\tsprot_Top_BLASTP_hit\tPfam\tSignalP\tTmHMM\teggnog\tKegg\tgene_ontology_BLASTX\tgene_ontology_BLASTP\tgene_ontology_Pfam\ttranscript\tpeptide\n TRINITY_DN596_c0_g1\tTRINITY_DN596_c0_g1_i1\tYB92_SCHPO^YB92_SCHPO^Q:102-1910,H:1-603^100%ID^E:0^RecName: Full=Uncharacterized ubiquitin-like protein C1E8.02;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces\t.\tTRINITY_DN596_c0_g1_i1|m.607\t102-1913[+]\tYB92_SCHPO^YB92_SCHPO^Q:1-603,H:1-603^100%ID^E:0^RecName: Full=Uncharacterized ubiquitin-like protein C1E8.02;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces\t.\t.\t.\t.\t.\tGO:0005829^cellular_component^cytosol`GO:0005783^cellular_component^endoplasmic reticulum`GO:0005789^cellular_component^endoplasmic reticulum membrane`GO:0016021^cellular_component^integral component of membrane`GO:0031593^molecular_function^polyubiquitin modification-dependent protein binding`GO:0032446^biological_process^protein modification by small protein conjugation`GO:0006511^biological_process^ubiquitin-dependent protein catabolic process\tGO:0005829^cellular_component^cytosol`GO:0005783^cellular_component^endoplasmic reticulum`GO:0005789^cellular_component^endoplasmic reticulum membrane`GO:0016021^cellular_component^integral component of membrane`GO:0031593^molecular_function^polyubiquitin modification-dependent protein binding`GO:0032446^biological_process^protein modification by small protein conjugation`GO:0006511^biological_process^ubiquitin-dependent protein catabolic process\t.\t.\t.\n-TRINITY_DN549_c0_g1\tTRINITY_DN549_c0_g1_i1\tGAA1_SCHPO^GAA1_SCHPO^Q:2-1363,H:121-574^100%ID^E:0^RecName: Full=GPI transamidase component gaa1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces\t.\tTRINITY_DN549_c0_g1_i1|m.608\t2-1387[+]\tGAA1_SCHPO^GAA1_SCHPO^Q:1-461,H:121-581^100%ID^E:0^RecName: Full=GPI transamidase component gaa1;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces\t.\t.\tExpAA=140.37^PredHel=6^Topology=i247-269o284-302i309-331o346-368i381-403o428-450i\t.\tKEGG:spo:SPAC1002.11`KO:K05289\tGO:0005783^cellular_component^endoplasmic reticulum`GO:0042765^cellular_component^GPI-anchor transamidase complex`GO:0016255^biological_process^attachment of GPI anchor to protein\tGO:0005783^cellular_component^endoplasmic reticulum`GO:0042765^cellular_component^GPI-anchor transamidase complex`GO:0016255^biological_process^attachment of GPI anchor to protein\t.\t.\t.\n-TRINITY_DN594_c0_g1\tTRINITY_DN594_c0_g1_i1\tERG27_SCHPO^ERG27_SCHPO^Q:1275-349,H:46-338^94.82%ID^E:0^RecName: Full=3-keto-steroid reductase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces\t.\tTRINITY_DN594_c0_g1_i1|m.612\t346-1275[-]\tERG27_SCHPO^ERG27_SCHPO^Q:1-309,H:46-338^94.82%ID^E:0^RecName: Full=3-keto-steroid reductase;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces\t.\t.\t.\t.\tKEGG:spo:SPBC1709.07`KO:K09827\tGO:0005789^cellular_component^endoplasmic reticulum membrane`GO:0005811^cellular_component^lipid droplet`GO:0000253^molecular_function^3-keto sterol reductase activity`GO:0006696^biological_process^ergosterol biosynthetic process\tGO:0005789^cellular_component^endoplasmic reticulum membrane`GO:0005811^cellular_component^lipid droplet`GO:0000253^molecular_function^3-keto sterol reductase activity`GO:0006696^biological_process^ergosterol biosynthetic process\t.\t.\t.\n-TRINITY_DN594_c0_g2\tTRINITY_DN594_c0_g2_i1\tERG27_SCHPO^ERG27_SCHPO^Q:1207-680,H:46-205^'..b'process^protein import into nucleus`GO:0036228^biological_process^protein localization to nuclear inner membrane`GO:0006405^biological_process^RNA export from nucleus`GO:0006407^biological_process^rRNA export from nucleus`GO:0000972^biological_process^transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery\tGO:0005737^cellular_component^cytoplasm`GO:0005635^cellular_component^nuclear envelope`GO:0005643^cellular_component^nuclear pore`GO:0044611^cellular_component^nuclear pore inner ring`GO:0017056^molecular_function^structural constituent of nuclear pore`GO:0006606^biological_process^protein import into nucleus`GO:0036228^biological_process^protein localization to nuclear inner membrane`GO:0006405^biological_process^RNA export from nucleus`GO:0006407^biological_process^rRNA export from nucleus`GO:0000972^biological_process^transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery\t.\t.\t.\n+TRINITY_DN59_c0_g1\tTRINITY_DN59_c0_g1_i1\tRNG3_SCHPO^RNG3_SCHPO^Q:1950-1060,H:450-746^100%ID^E:0^RecName: Full=Ring assembly protein 3;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces\t.\tTRINITY_DN59_c0_g1_i1|m.8862\t1057-1950[-]\tRNG3_SCHPO^RNG3_SCHPO^Q:1-297,H:450-746^100%ID^E:0^RecName: Full=Ring assembly protein 3;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces\t.\t.\t.\t.\tKEGG:spo:SPCC613.04c\tGO:0110085^cellular_component^mitotic actomyosin contractile ring`GO:0005844^cellular_component^polysome`GO:0017022^molecular_function^myosin binding`GO:0044183^molecular_function^protein folding chaperone`GO:0000917^biological_process^division septum assembly`GO:1903475^biological_process^mitotic actomyosin contractile ring assembly`GO:1902404^biological_process^mitotic actomyosin contractile ring contraction`GO:1902406^biological_process^mitotic actomyosin contractile ring maintenance\tGO:0110085^cellular_component^mitotic actomyosin contractile ring`GO:0005844^cellular_component^polysome`GO:0017022^molecular_function^myosin binding`GO:0044183^molecular_function^protein folding chaperone`GO:0000917^biological_process^division septum assembly`GO:1903475^biological_process^mitotic actomyosin contractile ring assembly`GO:1902404^biological_process^mitotic actomyosin contractile ring contraction`GO:1902406^biological_process^mitotic actomyosin contractile ring maintenance\t.\t.\t.\n+TRINITY_DN59_c0_g1\tTRINITY_DN59_c0_g1_i1\tRNG3_SCHPO^RNG3_SCHPO^Q:1950-1060,H:450-746^100%ID^E:0^RecName: Full=Ring assembly protein 3;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces\t.\tTRINITY_DN59_c0_g1_i1|m.8863\t2-619[+]\tYCS3_SCHPO^YCS3_SCHPO^Q:17-205,H:1-189^100%ID^E:3e-137^RecName: Full=Uncharacterized calcium-binding protein C613.03;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces\t.\t.\t.\t.\tKEGG:spo:SPCC613.03\tGO:0110085^cellular_component^mitotic actomyosin contractile ring`GO:0005844^cellular_component^polysome`GO:0017022^molecular_function^myosin binding`GO:0044183^molecular_function^protein folding chaperone`GO:0000917^biological_process^division septum assembly`GO:1903475^biological_process^mitotic actomyosin contractile ring assembly`GO:1902404^biological_process^mitotic actomyosin contractile ring contraction`GO:1902406^biological_process^mitotic actomyosin contractile ring maintenance\tGO:0005783^cellular_component^endoplasmic reticulum`GO:0005788^cellular_component^endoplasmic reticulum lumen`GO:0005793^cellular_component^endoplasmic reticulum-Golgi intermediate compartment`GO:0005794^cellular_component^Golgi apparatus`GO:0005796^cellular_component^Golgi lumen`GO:0005509^molecular_function^calcium ion binding\t.\t.\t.\n' |
| b |
| diff -r 4383070d29ed -r 2b093007fab9 test-data/trinotate_annotation_report_minus_tmhmm_signalp.xls --- a/test-data/trinotate_annotation_report_minus_tmhmm_signalp.xls Fri Aug 14 16:54:16 2020 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 |
| [ |
| b'@@ -1,249 +0,0 @@\n-#gene_id\ttranscript_id\tsprot_Top_BLASTX_hit\tRNAMMER\tprot_id\tprot_coords\tsprot_Top_BLASTP_hit\tPfam\tSignalP\tTmHMM\teggnog\tKegg\tgene_ontology_BLASTX\tgene_ontology_BLASTP\tgene_ontology_Pfam\ttranscript\tpeptide\n-TRINITY_DN596_c0_g1\tTRINITY_DN596_c0_g1_i1\tYB92_SCHPO^YB92_SCHPO^Q:102-1910,H:1-603^100%ID^E:0^RecName: Full=Uncharacterized ubiquitin-like protein C1E8.02;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces\t.\tTRINITY_DN596_c0_g1_i1|m.607\t102-1913[+]\tYB92_SCHPO^YB92_SCHPO^Q:1-603,H:1-603^100%ID^E:0^RecName: Full=Uncharacterized ubiquitin-like protein C1E8.02;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces\t.\t.\t.\t.\t.\tGO:0005829^cellular_component^cytosol`GO:0005783^cellular_component^endoplasmic reticulum`GO:0005789^cellular_component^endoplasmic reticulum membrane`GO:0016021^cellular_component^integral component of membrane`GO:0031593^molecular_function^polyubiquitin modification-dependent protein binding`GO:0032446^biological_process^protein modification by small protein conjugation`GO:0006511^biological_process^ubiquitin-dependent protein catabolic process\tGO:0005829^cellular_component^cytosol`GO:0005783^cellular_component^endoplasmic reticulum`GO:0005789^cellular_component^endoplasmic reticulum membrane`GO:0016021^cellular_component^integral component of membrane`GO:0031593^molecular_function^polyubiquitin modification-dependent protein binding`GO:0032446^biological_process^protein modification by small protein conjugation`GO:0006511^biological_process^ubiquitin-dependent protein catabolic process\t.\tTGTGATTCGTGCCGCTCAACATTTCTTCAAGTGATTCCTAACATTGCTGTACATTCTCTTGAAAAGCGTTTTAACCTTTTCAATTCTGAAACTTGTAAAGAATGTCAGAGTATCGTATTCGAGTGACAACTGTGGACCAGAAGGTTGGTATTTTTCAAGTTCCTAGGACAAAAACGGTTTTAGAATTAAAGGAACTGATTGCTGTAACATTTGAAGCTCCTGCAGATCGATTAAAGTTGATTCACGCTGGTCGTGTATTGAGGAATGAAACTCCCCTCGAGGAAATTTTGCATGACGCTACTGATCTGGTCACTTTTCATCTTGTAATTGCGGTTTTTAATTCTACAAGCACAACCTTGCCATCAGCGACATCATCTTCTGTTCCTCAAAGTAGGACCAGCGAATTATCATCGACTAATTCAATTCCAACTCCTCGAATCACCAGTTTGAACCCGGAAGAATTGTCAAGACGTGAACGTGCCCAACGTTTATTACAGACATACAACAGTTTCCATGGATCTGGCTTAGGAGGACTTTTTCCAAACATACACCGGGAACTAGAAAGTCACGGATTTTCATTGCCAACCCATGAGCAATCATCACCCGTTGCTGAATCTCTGGATAATTCGGTATCGTCTGCTTTATCTCCACATTTGGAAACGCTGCGTCGCCGCAATCTCAGTATTCATCATCAACATATACAAGCTCACGAAATGGCACAAGAGTCCTTGGAGACCAGAAATCCAGGAAACATTTCTTCCTCGAGTGCTCCTTTAGCTAGTGATCAATCCCCGACTGTATCATCTAACCATATCCATGCATCCGGTAATTTGGCTTTAGGATCAAATTCGGGGTTAAATCCACGAAGCCCTAATTCTTTTTCTTCCCCATTGGACAATCCTGCACTTCATACTGTTGACTCAACCAACGTCAATGGTTCGCTTTCACCTCTATCAAATTCTTCATCTATCAATCAAGTTCACCAAAATGAAACTCATGGTTCTACCATCTCAGTACCTAACCCGAACTTAAGTCAAATGGGCCCTTCACACTCTTCTTCTGTGCCCTCAAATCTGTCACCAAATCCTGCCCAAAATGAAAATCCTAGTACAACCTCTATTCCATCAATAAATAATCAACCATTCCCGTCTGGTCTTTCTGCTTCTAACTCTAATTTTGCCTCTTCCTCGTTTATCCCTCAGAGCGTTCCGCAACTATTGCCTATATATTATCAAACTATCTTTTACAACGGTAACTATTATTTACAGCAGCTCCCATCTGCATCGCCTCCCACTATGTTTCGAGATCACTCATTTGCTCCTTTAGTTTCCCCTTCTATTGTTTCTCCGTATGGTGTTTTAGAAAATGAAGAAACTGGCGAATGTGCCTTTTTGTTTTCACCAAATGCCTCCCAACCCCATTTTCAGCCGAGAGCCCCCACGTTTGGCATTCCACGAAATGTGAGATCCCTCTTCACCTTACCGTTCTTCCATACTATCCGTAATATTGAGAGACATTTCCGATTATTTATTCGTTTAGCCCTGTTTTGTGTATTAACGACTTATAATGTTTCTCTCTCACAAACAATTTTGCTAACATCTATAATGTCTGTTGTGTTTTTGTTACAGACCGGTGCTCTAGCTCCATTCATCAATGACAATCCACTCATCCAGTCTGGTATGCGTCATATTCGTAATCTTCAAGATGAATACCGGCGGCGTCGAAACCGAACGGCTCAAAGAGTAGTTGAAATTCCTAATGAGACACAGACTGAAGATGAACAAGATGGTACAAATACGCCGGATAATAGGGCTGACGCTGAAGAACGCGAACTAACTCGAAGTCAAAGAATATACCGGACGGTAGTAAGAACCATAGTTGCCTTCGCATTAAGCTTTGTACCTCGAGCGTAACATTTTTTTCTTAAAAACAAAAGTGATAATATAGCTGTAAAGTCATTTTTCATTACTAATTAGAAATATTGTCTAAGCTTGCTATTAATAAAAGAGTTCTAGCTAGACTAAATTTTGACAGTGTCGAAATATCATTCCAAGGTACCCCATCAGATTAACAAATTTATAA\tMSEYRIRVTTVDQKVGIFQVPRTKTVLELKELIAVTFEAPADRLKLIHAGRVLRNETPLEEILHDATDLVTFHLVIAVFNSTSTTLPSATSSSVPQSRTSELSSTNSIPTPRITSLNPEELSRRERAQRLLQTYNSFHGSGLGGLFPNIHRELESHGFSLPTHEQ'..b'TTAGTAAATATACTATGAGGAGCCACACTGATAAGAATTTTCGCTAATGCAAAAGCCGCATTCGAATCCTGGGTTTGGATAAAACATTGTCTAGTAAGGAATTTCAATGCACCTATTTGTACTAGCTTGCGACGTGCCAGCTTGTAATTAGCCATGTGTACAAGTATCATTGCTAATAACCCGTTTAGGCTATTATAGTGCTTGGCCGCTGAAAAGAGTTTTGAC\tSKLFSAAKHYNSLNGLLAMILVHMANYKLARRKLVQIGALKFLTRQCFIQTQDSNAAFALAKILISVAPHSIFTKAFPSNRAIHPMSKLLSTNSADTEYPILLGKFEVLLALTNLASHDEESRQAIVQECWRELDELIIETNPLIQRATTELINNLSLSPYCLIKFIGDKDSDFENTRLHIVLALSDTEDTPTRLAACGILVQITSVDEGCKKILSLQNDFNYIVRMLTDQDEGIQHRGLVCICNIVYSKDQEIFNKFIKTPKAVETLRTYITKQAALKELQHEALVMIDSRLQGSK*\n-TRINITY_DN59_c0_g1\tTRINITY_DN59_c0_g1_i1\tRNG3_SCHPO^RNG3_SCHPO^Q:1950-1060,H:450-746^100%ID^E:0^RecName: Full=Ring assembly protein 3;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces\t.\tTRINITY_DN59_c0_g1_i1|m.8863\t2-619[+]\tYCS3_SCHPO^YCS3_SCHPO^Q:17-205,H:1-189^100%ID^E:3e-137^RecName: Full=Uncharacterized calcium-binding protein C613.03;^Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces\t.\t.\t.\t.\tKEGG:spo:SPCC613.03\tGO:0110085^cellular_component^mitotic actomyosin contractile ring`GO:0005844^cellular_component^polysome`GO:0017022^molecular_function^myosin binding`GO:0000917^biological_process^division septum assembly`GO:1903475^biological_process^mitotic actomyosin contractile ring assembly`GO:1902406^biological_process^mitotic actomyosin contractile ring maintenance\tGO:0005783^cellular_component^endoplasmic reticulum`GO:0005788^cellular_component^endoplasmic reticulum lumen`GO:0005793^cellular_component^endoplasmic reticulum-Golgi intermediate compartment`GO:0005794^cellular_component^Golgi apparatus`GO:0005796^cellular_component^Golgi lumen`GO:0005509^molecular_function^calcium ion binding\t.\tAGAACTTGACCGCAGCGCACATCAACTACACCTTGAGGCAATTCAAAATATGAAGTTTTCTACCGTAGGGTTTTTGTTTTCAACAATTTTATTCAAAAGTGCGTTTGCAGGATGGATGGATACACACATGAAAGATGAACATCACATTGATAAGTACACAGATGAATCTTTTTTTCGTCTTCACGATTTAGGAAAAAAGGGATACTGGTCAGATCAAGATATACTTAGTTTATATGGATTATTTGAAAATGATGAGGTCCCATTCGTCAAAAAGAATGAGGTTTTGGTTGATGTTCTAAAAAAATGCGATCCATCGGGCAATCGCCGGATAACACTTGATGAATTTCTTGCATTTCGTAAAAATGGAGGAGAGTTAACGGATTTTGGATTTCCAGGGCACCATGGTGATGAGGAAGAGGAATTTGAAATGCATCATGTGGAAAAATATCACCCAGCTGGCCTCGATGAACCAGATGAAAACTGGAATCATCCTGAAGATATCGAACATTTTCAAAAACACGATGAGATATTTCATGGTGATAAGAAACCTGAGGAACGACGCAAACATTTTGTAAAATACAATAATATCCCTGACAAGTATCGTCGTGTGAGCATTTAAATTTTCCCATTGATAGATTTACTTGCTTCTCCTTGGGACGTTTTATTTTTATTTTTATTTTTCCGTTTATTTTTGGATTGTCGTGTTCCGATATATATCCGTGTTTACAAACAATAGCTTCAACATTTTTGAACGGGTCCTTCCAATACTAATGCCATATCTTATTTCTTTGTCAATACAAAATCACTTTTGTTCGTTAAACTCATTTTGGTTTGCAGATATTATCATATTCTTACCAATTATACATACACTCACAATTTGTTTTACATTTCCGCTCCCTTCTTCAATAAGCTGATTGCTTATAAAAAATCAAACATTCATATGATTCAAGTTCAAATATTATCATCTGAAAACTGACAAGTTCCATTCATTACTATATTAATATCATTTATTCGTTAAACCGATATCATTAAAAATGGAAAATTAAAGAAATCAATTCATTTGCTTCCTTGAAGTCTAGAGTCGATCATAACGAGAGCTTCATGTTGAAGCTCTTTAAGTGCAGCTTGCTTAGTAATATAAGTGCGTAATGTTTCAACAGCCTTTGGTGTTTTTATGAACTTGTTAAATATTTCTTGATCTTTGGAATATACGATATTGCATATGCAAACTAATCCACGATGTTGAATTCCTTCATCTTGGTCGGTTAACATTCTGACTATGTAGTTAAAATCGTTCTGGAGACTTAAAATTTTCTTGCACCCTTCATCAACACTAGTAATTTGAACAAGAATTCCGCATGCTGCTAATCTCGTGGGAGTGTCTTCGGTATCTGAGAGTGCTAGTACAATGTGTAAACGAGTATTTTCAAAATCCGAGTCCTTGTCTCCTATAAACTTAATTAAGCAATAAGGTGATAAAGAAAGGTTGTTAATAAGTTCCGTGGTTGCCCTCTGAATTAAAGGATTTGTTTCTATAATTAGTTCATCCAATTCTCTCCAACATTCTTGAACTATGGCTTGCCGACTTTCTTCATCATGTGAAGCAAGATTTGTTAGCGCAAGTAACACTTCAAATTTCCCCAAGAGAATTGGATACTCAGTATCAGCAGAATTAGTACTTAGTAACTTTGACATAGGATGAATTGCTCGGTTCGATGGAAACGCCTTAGTAAATATACTATGAGGAGCCACACTGATAAGAATTTTCGCTAATGCAAAAGCCGCATTCGAATCCTGGGTTTGGATAAAACATTGTCTAGTAAGGAATTTCAATGCACCTATTTGTACTAGCTTGCGACGTGCCAGCTTGTAATTAGCCATGTGTACAAGTATCATTGCTAATAACCCGTTTAGGCTATTATAGTGCTTGGCCGCTGAAAAGAGTTTTGAC\tELDRSAHQLHLEAIQNMKFSTVGFLFSTILFKSAFAGWMDTHMKDEHHIDKYTDESFFRLHDLGKKGYWSDQDILSLYGLFENDEVPFVKKNEVLVDVLKKCDPSGNRRITLDEFLAFRKNGGELTDFGFPGHHGDEEEEFEMHHVEKYHPAGLDEPDENWNHPEDIEHFQKHDEIFHGDKKPEERRKHFVKYNNIPDKYRRVSI*\n' |
| b |
| diff -r 4383070d29ed -r 2b093007fab9 trinotate.xml --- a/trinotate.xml Fri Aug 14 16:54:16 2020 -0400 +++ b/trinotate.xml Sun Nov 21 17:18:27 2021 +0000 |
| [ |
| @@ -1,15 +1,20 @@ -<tool id="trinotate" name="Trinotate" version="3.2.1"> +<tool id="trinotate" name="Trinotate" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="20.05"> + <description>functional transcript annotation</description> + <macros> + <token name="@TOOL_VERSION@">3.2.2</token> + <token name="@VERSION_SUFFIX@">0</token> + </macros> <requirements> - <requirement type="package" version="3.2.1">trinotate</requirement> + <requirement type="package" version="@TOOL_VERSION@">trinotate</requirement> <requirement type="package" version="1.18">gnu-wget</requirement> </requirements> - <stdio> - <exit_code range="1:" /> - </stdio> + <xrefs> + <xref type="bio.tools">trinotate</xref> + </xrefs> <version_command><![CDATA[ - Trinotate version 3.2.1 + Trinotate version @TOOL_VERSION@ ]]></version_command> - <command><![CDATA[ + <command detect_errors="exit_code"><![CDATA[ #if str($cond_download.select_download) == "yes": Build_Trinotate_Boilerplate_SQLite_db.pl Trinotate && @@ -107,7 +112,13 @@ <param name="incl_trans" value="true" /> </section> <param name="keep_sqlite" value="true" /> - <output name="trinotate_out" file="trinotate_annotation_report_minus_tmhmm_signalp.xls" /> + <output name="trinotate_out" ftype="tabular" > + <assert_contents> + <has_size value="573911" delta="100"/> + <has_text text="Meiotically up-regulated gene 56 protein"/> + <has_text text="Serine/threonine-protein kinase tor1"/> + </assert_contents> + </output> </test> </tests> <help><![CDATA[ |