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Repository trinotate
Name: trinotate
Owner: iuc
Synopsis: Trinotate is a comprehensive annotation suite designed for automatic functional annotation of de novo transcriptomes.
Trinotate is a comprehensive annotation suite designed for automatic functional annotation of transcriptomes, 
particularly de novo assembled transcriptomes, from model or non-model organisms.

It will summarize, in a tabular report and SQLite database, different upstream outputs: 
 - Trinity: iuc/trinity https://toolshed.g2.bx.psu.edu/repository?repository_id=faf6028922d9220a
 - TransDecoder: iuc/transdecoder https://toolshed.g2.bx.psu.edu/repository?repository_id=7a2a8151a50f8099
 - Generate gene to transcript map for Trinity assembly: iuc/trinity_gene_to_trans_map https://toolshed.g2.bx.psu.edu/repository?repository_id=faf6028922d9220a
 - NCBI BLAST+ blastp: devteam/ncbi_blast_plus https://toolshed.g2.bx.psu.edu/repository?repository_id=1d92ebdf7e8d466c
 - NCBI BLAST+ blastx: devteam/ncbi_blast_plus https://toolshed.g2.bx.psu.edu/repository?repository_id=1d92ebdf7e8d466c
 - HMMER hmmscan: iuc/hmmer_hmmscan https://toolshed.g2.bx.psu.edu/repository?repository_id=a2cc4683090b1800
 - TMHMM 2.0: peterjc/tmhmm_and_signalp https://toolshed.g2.bx.psu.edu/repository?repository_id=292389a45f1a238a
 - SignalP 3.0: peterjc/tmhmm_and_signalp https://toolshed.g2.bx.psu.edu/repository?repository_id=292389a45f1a238a
Content homepage: https://trinotate.github.io/
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/trinotate
Type: unrestricted
Revision: 4:2b093007fab9
This revision can be installed: True
Times cloned / installed: 812

Contents of this repository

Name Description Version Minimum Galaxy Version
functional transcript annotation 3.2.2+galaxy0 20.05

Categories
Transcriptomics - Tools for use in the study of Transcriptomics.
RNA - Utilities for RNA