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Repository trinotate
Name: trinotate
Owner: iuc
Synopsis: Trinotate is a comprehensive annotation suite designed for automatic functional annotation of de novo transcriptomes.
Trinotate is a comprehensive annotation suite designed for automatic functional annotation of transcriptomes, 
particularly de novo assembled transcriptomes, from model or non-model organisms.

It will summarize, in a tabular report and SQLite database, different upstream outputs: 
 - Trinity: iuc/trinity
 - TransDecoder: iuc/transdecoder
 - Generate gene to transcript map for Trinity assembly: iuc/trinity_gene_to_trans_map
 - NCBI BLAST+ blastp: devteam/ncbi_blast_plus
 - NCBI BLAST+ blastx: devteam/ncbi_blast_plus
 - HMMER hmmscan: iuc/hmmer_hmmscan
 - TMHMM 2.0: peterjc/tmhmm_and_signalp
 - SignalP 3.0: peterjc/tmhmm_and_signalp
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Contents of this repository

Name Description Version Minimum Galaxy Version
functional transcript annotation 3.2.2+galaxy0 20.05

Transcriptomics - Tools for use in the study of Transcriptomics.
RNA - Utilities for RNA