| Previous changeset 2:8a739c944dbf (2018-05-15) Next changeset 4:110fc7a9a016 (2018-05-15) |
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Commit message:
planemo upload commit e96b43f96afce6a7b7dfd4499933aad7d05c955e-dirty |
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modified:
computeFraglen.xml computeGC.xml genMutModel.xml genSeqErrorModel.xml neat_genreads.xml |
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| diff -r 8a739c944dbf -r edca797fa2b2 computeFraglen.xml --- a/computeFraglen.xml Tue May 15 16:22:08 2018 -0400 +++ b/computeFraglen.xml Tue May 15 16:41:15 2018 -0400 |
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| @@ -4,10 +4,8 @@ profile="16.04"> <description>computes empirical fragment length distribution from sample data in BAM format. Creates model file for use in NEAT-genReads</description> <requirements> - <requirement type="package" version="2.7">python</requirement> <requirement type="package" version="0.1.19">samtools</requirement> <requirement type="package" version="1.9.1">numpy</requirement> - <requirement type="package">libgfortran</requirement> </requirements> <command detect_errors="exit_code"> <![CDATA[ |
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| diff -r 8a739c944dbf -r edca797fa2b2 computeGC.xml --- a/computeGC.xml Tue May 15 16:22:08 2018 -0400 +++ b/computeGC.xml Tue May 15 16:41:15 2018 -0400 |
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| @@ -4,10 +4,8 @@ profile="16.04"> <description>computes GC% coverage bias distribution from sample in BAM format. Creates model file for use in NEAT-genReads</description> <requirements> - <requirement type="package" version="2.7">python</requirement> <requirement type="package" version="2.25.0">bedtools</requirement> <requirement type="package" version="1.9.1">numpy</requirement> - <requirement type="package">libgfortran</requirement> </requirements> <command detect_errors="exit_code"> <![CDATA[ |
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| diff -r 8a739c944dbf -r edca797fa2b2 genMutModel.xml --- a/genMutModel.xml Tue May 15 16:22:08 2018 -0400 +++ b/genMutModel.xml Tue May 15 16:41:15 2018 -0400 |
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| @@ -4,10 +4,8 @@ profile="16.04"> <description>generates a mutation model based on provided mutations. Creates model file for use in NEAT-genReads</description> <requirements> - <requirement type="package" version="2.7">python</requirement> <requirement type="package" version="1.9.1">numpy</requirement> <requirement type="package">matplotlib</requirement> - <requirement type="package">libgfortran</requirement> </requirements> <command detect_errors="exit_code"> <![CDATA[ |
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| diff -r 8a739c944dbf -r edca797fa2b2 genSeqErrorModel.xml --- a/genSeqErrorModel.xml Tue May 15 16:22:08 2018 -0400 +++ b/genSeqErrorModel.xml Tue May 15 16:41:15 2018 -0400 |
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| @@ -4,10 +4,8 @@ profile="16.04"> <description>generates sequence error model for genReads. Creates model file for use in NEAT-genReads</description> <requirements> - <requirement type="package" version="2.7">python</requirement> <requirement type="package" version="1.9.1">numpy</requirement> <requirement type="package">matplotlib</requirement> - <requirement type="package">libgfortran</requirement> </requirements> <command detect_errors="exit_code"> <![CDATA[ |
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| diff -r 8a739c944dbf -r edca797fa2b2 neat_genreads.xml --- a/neat_genreads.xml Tue May 15 16:22:08 2018 -0400 +++ b/neat_genreads.xml Tue May 15 16:41:15 2018 -0400 |
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| @@ -4,9 +4,7 @@ profile="16.04"> <description>is a fine-grained read simulator</description> <requirements> - <requirement type="package" version="2.7">python</requirement> <requirement type="package" version="1.9.1">numpy</requirement> - <requirement type="package">libgfortran</requirement> </requirements> <command detect_errors="exit_code"> <![CDATA[ |