| Tool that simulates FASTQ reads from error models or VCF file. Provides truth sets for evaluation |
hg clone https://toolshed.g2.bx.psu.edu/repos/thondeboer/neat_genreads
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| computes empirical fragment length distribution from sample data in BAM format. Creates model file for use in NEAT-genReads | 1.0.0 | 16.04 | |
| generates a mutation model based on provided mutations. Creates model file for use in NEAT-genReads | 1.0.0 | 16.04 | |
| computes GC% coverage bias distribution from sample in BAM format. Creates model file for use in NEAT-genReads | 1.0.0 | 16.04 | |
| generates sequence error model for genReads. Creates model file for use in NEAT-genReads | 1.0.0 | 16.04 | |
| is a fine-grained read simulator | 1.0.0 | 16.04 | |