| Previous changeset 5:233dfabc8592 (2018-04-10) Next changeset 7:fd067a1143f3 (2019-10-07) |
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Commit message:
planemo upload for repository https://github.com/bgruening/galaxytools/tree/master/tools/rna_tools/intarna commit da73dae857c2ee9447aad05f260f7da5ea1db3a6 |
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modified:
intarna.xml test-data/intarna_result.tabular |
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| diff -r 233dfabc8592 -r 3f6715821198 intarna.xml --- a/intarna.xml Tue Apr 10 09:19:19 2018 -0400 +++ b/intarna.xml Tue Apr 10 12:24:44 2018 -0400 |
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| @@ -1,4 +1,4 @@ -<tool id="intarna" name="IntaRNA" version="2.1.0.2"> +<tool id="intarna" name="IntaRNA" version="2.2.0"> <description>Efficient RNA-RNA interaction prediction incorporating accessibility and seeding of interaction sites.</description> <macros> <macro name="query_macro"> @@ -48,7 +48,7 @@ label="Max. loop length" help="... for query accessibility computation. 0 defaults to sliding window size 'tAccW'"/> </macro> <macro name="seed_macro"> - <param argument="--noSeed" truevalue="--noSeed" falsevalue="" checked="False" type="boolean" + <param argument="--noSeed" truevalue="--noSeed" falsevalue="" checked="false" type="boolean" label="Disable seed constraint entirely for computation" help=""/> <param argument="--seedBP" type="integer" value="7" min="2" max="20" label="Min. number of basepairs in seed" help="number of inter-molecular base pairs within the seed region"/> <param argument="--seedMaxUP" type="integer" value="0" min="0" max="20" @@ -84,7 +84,7 @@ </macro> </macros> <requirements> - <requirement type="package" version="2.1.0">intarna</requirement> + <requirement type="package" version="2.2.0">intarna</requirement> </requirements> <stdio> <exit_code range="1:" level="fatal" description="Error occurred. Please check Tool Standard Error" /> |
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| diff -r 233dfabc8592 -r 3f6715821198 test-data/intarna_result.tabular --- a/test-data/intarna_result.tabular Tue Apr 10 09:19:19 2018 -0400 +++ b/test-data/intarna_result.tabular Tue Apr 10 12:24:44 2018 -0400 |
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| @@ -1,4 +1,4 @@ id1 start1 end1 id2 start2 end2 subseqDP hybridDP E -mRNA1 85 95 ncRNA1 21 32 GUGGUGAGGAG&CUCCUCACACAC (((((((((((&)))))))).))) -12.0345 -mRNA1 52 58 ncRNA2 28 34 UCAGUUA&UGACUGA (((((((&))))))) -3.32148 -mRNA2 86 97 ncRNA1 20 31 UGUGUGACGAGU&ACUCCUCACACA (((((((.((((&)))).))))))) -8.33678 +mRNA1 85 95 ncRNA1 21 32 GUGGUGAGGAG&CUCCUCACACAC (((((((((((&)))))))).))) -11.8783 +mRNA1 52 58 ncRNA2 28 34 UCAGUUA&UGACUGA (((((((&))))))) -3.08648 +mRNA2 86 97 ncRNA1 20 31 UGUGUGACGAGU&ACUCCUCACACA (((((((.((((&)))).))))))) -8.16744 |