Repository 'cufflinks'
hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/cufflinks

Changeset 6:9aab29e159a7 (2014-01-16)
Previous changeset 5:fe6f99e3d7f4 (2014-01-09) Next changeset 7:5346d5eea8b1 (2014-12-19)
Commit message:
Convert tool to use $GALAXY_SLOTS if available.
modified:
cufflinks_wrapper.xml
b
diff -r fe6f99e3d7f4 -r 9aab29e159a7 cufflinks_wrapper.xml
--- a/cufflinks_wrapper.xml Thu Jan 09 14:28:13 2014 -0500
+++ b/cufflinks_wrapper.xml Thu Jan 16 13:14:05 2014 -0500
b
@@ -9,7 +9,7 @@
         cufflinks_wrapper.py 
             --input=$input
             --assembled-isoforms-output=$assembled_isoforms
-            --num-threads="4"
+            --num-threads="\${GALAXY_SLOTS:-4}"
             -I $max_intron_len
             -F $min_isoform_fraction
             -j $pre_mrna_fraction