Repository 'data_manager_fetch_refseq'
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/data_manager_fetch_refseq

Changeset 1:937f167631b1 (2019-01-13)
Previous changeset 0:8b91891ae805 (2018-10-01) Next changeset 2:5d2ef93c6314 (2019-11-28)
Commit message:
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/data_managers/data_manager_fetch_refseq commit 8cad1e44b2393cb36f60a4d705536dee235a8434
modified:
data_manager/fetch_refseq.xml
b
diff -r 8b91891ae805 -r 937f167631b1 data_manager/fetch_refseq.xml
--- a/data_manager/fetch_refseq.xml Mon Oct 01 15:36:01 2018 -0400
+++ b/data_manager/fetch_refseq.xml Sun Jan 13 09:26:57 2019 -0500
[
@@ -7,7 +7,7 @@
     <command detect_errors="exit_code"><![CDATA[
     python $__tool_directory__/fetch_refseq.py
       #if str( $advanced.advanced_selector ) == 'advanced':
-        '${advanced.compress}'
+        ${advanced.compress}
       #end if
       --galaxy_datamanager_filename '${output_file}'
       --division_names ${division_names}
@@ -69,6 +69,21 @@
                 </assert_contents>
             </output>
         </test>
+        <test>
+            <param name="division_names" value="plastid"/>
+            <param name="mol_types" value="protein"/>
+            <param name="pin_date" value="2018-03-14"/>            
+            <param name="advanced_selector" value="advanced"/>
+            <param name="compress" value="" />
+            <output name="output_file">
+                <assert_contents>
+                    <has_text text="2018-03-14"/>
+                    <has_text text="refseq_plastid"/>
+                    <has_text text="/refseq_plastid."/>
+                </assert_contents>
+            </output>
+        </test>
+
     </tests>
     <help><![CDATA[
 This data manager fetches FASTA format collections of proteins, nucleotides (genomic DNA) and RNA