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Repository package_bowtie_2_2_6

Name: package_bowtie_2_2_6

Owner: iuc

Synopsis: Contains a tool dependency definition that downloads and compiles version 2.2.6 of bowtie2.

Detailed description:

Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to
long reference sequences. It is particularly good at aligning reads of about 50 up
to 100s or 1,000s of characters, and particularly good at aligning to relatively long
(e.g. mammalian) genomes. Bowtie 2 indexes the genome with an FM Index to keep its
memory footprint small: for the human genome, its memory footprint is typically around
3.2 GB. Bowtie 2 supports gapped, local, and paired-end alignment modes.

http://bowtie-bio.sourceforge.net/bowtie2/index.shtml

Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/packages/package_bowtie_2_2_6

Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/package_bowtie_2_2_6/0d9cd7487cc9

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/package_bowtie_2_2_6

Type: tool_dependency_definition

Revision: 1:0d9cd7487cc9

This revision can be installed: True

Times cloned / installed: 4207