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Repository gtf2gene_list
Name: gtf2gene_list
Owner: ebi-gxa
Synopsis: Utility to extract annotations from Ensembl GTF files.
Given a GTF file from Ensembl, this utility will generate a simple text file containing annotation, derived using the rtracklayer R package. All annotations can be extracted or a selection of specified columns, with or without a header.
Content homepage: https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary
Development repository: https://github.com/ebi-gene-expression-group/container-galaxy-sc-tertiary/tree/develop/tools/gtf-2-gene-list/.shed.yml
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/ebi-gxa/gtf2gene_list/040d4b3a19d5
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/ebi-gxa/gtf2gene_list
Type: unrestricted
Revision: 0:040d4b3a19d5
This revision can be installed: True
Times cloned / installed: 756

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
extracts gene ids from Ensembl GTF using rtracklayer 1.42.1+galaxy0 16.01

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis