Galaxy |

Repository tximport

Name: tximport

Owner: iuc

Synopsis: Wrapper for the Bioconductor package tximport

Detailed description:

Imports transcript-level abundance, estimated counts and transcript lengths,
and summarizes into matrices for use with downstream statistical analysis
packages such as edgeR, DESeq2, limma-voom. Average transcript length,
weighted by sample-specific transcript abundance estimates, is provided as a
matrix which can be used as an offset for different expression of gene-level
counts.

Content homepage: http://bioconductor.org/packages/tximport/

Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/tximport

Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/tximport/1906cb429215

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/tximport

Type: unrestricted

Revision: 2:1906cb429215

This revision can be installed: True

Times cloned / installed: 339

Contents of this repository

Name	Description	Version	Minimum Galaxy Version
Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
tximport View tool metadata	Summarize transcript-level estimates for gene-level analysis	1.22.0	20.09