Galaxy |

Repository revision

Repository arriba_get_filters

Name: arriba_get_filters

Owner: iuc

Synopsis: Arriba Get Filters (from the Arriba tool suite)

Detailed description:

Arriba detects gene fusions from STAR aligned RNA-Seq data.
It was developed for the use in a clinical research setting.
Therefore, short runtimes and high sensitivity were important design criteria.

Apart from gene fusions, Arriba can detect other structural rearrangements
with potential clinical relevance, such as viral integration sites,
internal tandem duplications, whole exon duplications,
truncations of genes (i.e., breakpoints in introns and intergenic regions).

Content homepage: https://github.com/suhrig/arriba

Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/arriba

Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/arriba_get_filters/1fe9d667447c

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/arriba_get_filters

Type: unrestricted

Revision: 1:1fe9d667447c

This revision can be installed: True

Times cloned / installed: 359