| This repository contains three sets of tools: 1 create microsatellite length profile, 2 correct for sequencing errors and report genotype, 3 estimate minimum sequencing read depth.
|
hg clone https://toolshed.g2.bx.psu.edu/repos/arkarachai-fungtammasan/str_fm
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| from the same allele combination | 2.0.0 | any | |
| of the consecutive allele from given error profile | 2.0.0 | any | |
| that occur during sequencing and library prep | 2.0.0 | any | |
| the STRs in the reads and output two fastq files in forward-forward orientation | 1.0.0 | any | |
| for flank-based mapping of microsatellites | 1.0.0 | any | |
| 2.0.0 | any | ||
| 1.0.0 | any | ||
| --change space to underscore in the read name column | 1.0.0 | any | |
| and get the reference STR allele from the reference genome | 1.1.0 | any | |
| of a specific column | 1.0.0 | any | |
| for short read, reference, and mapped data | 1.0.0 | any | |