Variant annotation and effect prediction tools. It annotates and predicts the effects of variants on genes. There are data managers for tha Galaxy admin to download genome databases. |
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/snpeff
Name | Description | Version | Minimum Galaxy Version |
---|---|---|---|
annotate variants | 4.3+T.galaxy1 | 16.01 | |
database from Genbank or GFF record | 4.3+T.galaxy4 | 16.01 | |
list available databases | 4.3+T.galaxy2 | 16.01 | |
download a pre-built database | 4.3+T.galaxy2 | 16.01 | |
list chromosome names/lengths | 4.3+T.galaxy1 | 16.01 |