This repository has been marked as deprecated, so some tool shed features may be restricted.
Repository metavisitor_workflows
Name: metavisitor_workflows
Owner: drosofff
Synopsis: A collection of workflows using the Metavisitor tools
This Tool Shed Repository contains a collection of workflows using the Metavisitor tools.
Content homepage: http://artbio.fr
Development repository: https://github.com/ARTbio/tools-artbio/tree/master/workflows
Link to this repository: https://toolshed.g2.bx.psu.edu/view/drosofff/metavisitor_workflows/26e2d79e4c17
Type: unrestricted
Revision: 5:26e2d79e4c17
This revision can be installed: True
Times cloned / installed: 65
Dependencies of this repository

Repository dependencies - These workflows require the repository suite_metavisitor_1_2
Repository sra_tools revision 62e4d56ebb6f owned by iuc
Repository yac_clipper revision a18edcf9c7ed owned by drosofff
Repository concatenate_multiple_datasets revision 201c568972c3 owned by mvdbeek
Repository msp_sr_bowtie revision 615d2550977f owned by drosofff
Repository msp_fasta_tabular_converter revision 36388b666bfc owned by drosofff
Repository fetch_fasta_from_ncbi revision a9d8f69d59fb owned by drosofff
Repository msp_cap3 revision ddb463fdf57e owned by drosofff
Repository cherry_pick_fasta revision f7684171dab3 owned by drosofff
Repository msp_blastparser_and_hits revision 1991c830504a owned by drosofff
Repository msp_oases revision 68ed36eed6c5 owned by drosofff
Repository trinityrnaseq revision 0a576a57a9eb owned by anmoljh
Repository blast_to_scaffold revision 81ffa74cf96e owned by drosofff
Repository blastx_to_scaffold revision 940c0c669e96 owned by drosofff
Repository bowtie2 revision a9d4f71dbfb0 owned by devteam
Repository fastx_trimmer revision 377ac2829eac owned by devteam
Repository fastq_to_fasta revision 186b8d913e6c owned by devteam
Repository fasta_filter_by_length revision e626b3ff9922 owned by devteam
Repository msp_sr_readmap_and_size_histograms revision 92898cc3ea19 owned by drosofff
Repository regex_find_replace revision 9ea374bb0350 owned by jjohnson
Repository khmer_normalize_by_median revision f0290a079720 owned by iuc
Repository data_manager_bowtie2_index_builder revision e87aeff2cf88 owned by devteam
Repository data_manager_bowtie_index_builder revision ea5faedd0795 owned by iuc
Repository data_manager_fetch_genome_dbkeys_all_fasta revision b1bc53e9bbc5 owned by devteam
Repository ncbi_blast_plus revision 3034ce97dd33 owned by devteam
Repository spades revision 35cb17bd8bf9 owned by nml
Repository package_bowtie_1_1_2 revision a1c1a92e13a6 owned by iuc
Repository package_samtools_1_2 revision f6ae3ba3f3c1 owned by iuc
Repository package_cap3_3 revision 8b91ecadabb5 owned by jjohnson
Repository package_trinityrnaseq_r20140717 revision e1a35a46c53d owned by anmoljh (prior install required)
Repository package_bowtie_0_12_7 revision 9f9f38617a98 owned by devteam (prior install required)
Repository package_samtools_1_2 revision 0918c21d2f6d owned by anmoljh (prior install required)
Repository package_ncurses_5_9 revision 93ce0192b9db owned by anmoljh (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_bowtie_2_2_6 revision 0d9cd7487cc9 owned by iuc
Repository package_samtools_1_2 revision f6ae3ba3f3c1 owned by iuc
Repository package_fastx_toolkit_0_0_13 revision ec66ae4c269b owned by devteam
Repository package_fastx_toolkit_0_0_13 revision ec66ae4c269b owned by devteam
Repository package_bz2file_0_98 revision 73382c8fa8f3 owned by iuc
Repository package_screed_0_9 revision 639e5e37404d owned by iuc
Repository package_khmer_2_0 revision c02c1e1abd48 owned by iuc
Repository package_bowtie_2_2_6 revision 0d9cd7487cc9 owned by iuc
Repository package_bowtie_1_1_2 revision a1c1a92e13a6 owned by iuc
Repository blast_datatypes revision 01b38f20197e owned by devteam
Repository package_blast_plus_2_2_31 revision 921d2963a177 owned by iuc
Repository package_spades_3_9_0 revision d8c8c3dc8f9a owned by nml
Repository package_ncurses_5_9 revision 335ebf512407 owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_ncurses_5_9 revision 93ce0192b9db owned by anmoljh (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_bz2file_0_98 revision 73382c8fa8f3 owned by iuc (prior install required)
Repository package_bz2file_0_98 revision 73382c8fa8f3 owned by iuc
Repository package_screed_0_9 revision 639e5e37404d owned by iuc
Repository package_setuptools_19_0 revision cb689698d484 owned by iuc (prior install required)

Categories
RNA - Utilities for RNA
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis
Assembly - Tools for working with assemblies