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Repository raceid_inspecttrajectory
Name: raceid_inspecttrajectory
Owner: iuc
Synopsis: Wrapper for the RaceID pipeline tool: Lineage Branch Analysis using StemID
RaceID is a method for cell type identification from single-cell RNA-seq data by unsupervised learning. An initial clustering is followed by an outlier identification based on a backgorund model of combined technical and biological variability in single-cell RNA-seq data obtained by quantification with unique molecular identifiers. StemID permits subsequent inference of a lineage tree based on clusters, i.e. cell types, identified by RaceID.
Content homepage: https://github.com/dgrun/RaceID3_StemID2_package/
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/raceid3
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/raceid_inspecttrajectory/3478133d0f6f
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/raceid_inspecttrajectory
Type: unrestricted
Revision: 7:3478133d0f6f
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Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
inspects branches of a lineage tree 0.2.3+galaxy1 16.01

Categories
Transcriptomics - Tools for use in the study of Transcriptomics.