| Trinotate is a comprehensive annotation suite designed for automatic functional annotation of transcriptomes, particularly de novo assembled transcriptomes, from model or non-model organisms. It will summarize, in a tabular report and SQLite database, different upstream outputs: - Trinity: iuc/trinity https://toolshed.g2.bx.psu.edu/repository?repository_id=faf6028922d9220a - TransDecoder: iuc/transdecoder https://toolshed.g2.bx.psu.edu/repository?repository_id=7a2a8151a50f8099 - Generate gene to transcript map for Trinity assembly: iuc/trinity_gene_to_trans_map https://toolshed.g2.bx.psu.edu/repository?repository_id=faf6028922d9220a - NCBI BLAST+ blastp: devteam/ncbi_blast_plus https://toolshed.g2.bx.psu.edu/repository?repository_id=1d92ebdf7e8d466c - NCBI BLAST+ blastx: devteam/ncbi_blast_plus https://toolshed.g2.bx.psu.edu/repository?repository_id=1d92ebdf7e8d466c - HMMER hmmscan: iuc/hmmer_hmmscan https://toolshed.g2.bx.psu.edu/repository?repository_id=a2cc4683090b1800 - TMHMM 2.0: peterjc/tmhmm_and_signalp https://toolshed.g2.bx.psu.edu/repository?repository_id=292389a45f1a238a - SignalP 3.0: peterjc/tmhmm_and_signalp https://toolshed.g2.bx.psu.edu/repository?repository_id=292389a45f1a238a |
hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/trinotate
| Name | Description | Version | Minimum Galaxy Version |
|---|---|---|---|
| 3.1.1 | 16.01 | ||