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Repository scpipe
Name: scpipe
Owner: iuc
Synopsis: A flexible preprocessing pipeline for single-cell RNA-sequencing data
A preprocessing pipeline for single cell RNA-seq data that starts from the fastq files and produces a gene count matrix and a HTML report with associated quality control information. It can process fastq data generated by CEL-seq, MARS-seq, Drop-seq, Chromium 10x and SMART-seq protocols.
Content homepage: http://bioconductor.org/packages/release/bioc/html/scPipe.html
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/scpipe
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/scpipe/7397e6badc11
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/scpipe
Type: unrestricted
Revision: 3:7397e6badc11
This revision can be installed: True
Times cloned / installed: 478

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
- preprocessing pipeline for single cell RNA-seq 1.0.0+galaxy1 16.01

Categories
Transcriptomics - Tools for use in the study of Transcriptomics.
RNA - Utilities for RNA
Statistics - Tools for generating statistics