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Repository scpipe
Name: scpipe
Owner: iuc
Synopsis: A flexible preprocessing pipeline for single-cell RNA-sequencing data
A preprocessing pipeline for single cell RNA-seq data that starts from the fastq files and produces a gene count matrix and a HTML report with associated quality control information. It can process fastq data generated by CEL-seq, MARS-seq, Drop-seq, Chromium 10x and SMART-seq protocols.
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/scpipe
Type: unrestricted
Revision: 5:a3b3ec00bf8f
This revision can be installed: True
Times cloned / installed: 432

Contents of this repository

Name Description Version Minimum Galaxy Version
- preprocessing pipeline for single cell RNA-seq 1.0.0+galaxy2 19.01

Categories
Transcriptomics - Tools for use in the study of Transcriptomics.
RNA - Utilities for RNA
Statistics - Tools for generating statistics