Repository revision
repository tip
Select a revision to inspect and download versions of Galaxy utilities from this repository.

Repository suite_bcftools_1_3
Name: suite_bcftools_1_3
Owner: iuc
Synopsis: A suite of Galaxy tools designed to work with version 1.3 of the bcftools package.
BCFtools are meant as a faster replacement for most of the perl VCFtools commands.
Content homepage: https://samtools.github.io/bcftools/
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/bcftools
Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/suite_bcftools_1_3/79bdd611a200
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/suite_bcftools_1_3
Type: repository_suite_definition
Revision: 10:79bdd611a200
This revision can be installed: True
Times cloned / installed: 466
Dependencies of this repository

Repository dependencies - A suite of Galaxy tools designed to work with version 1.3 of the bcftools package.
Repository package_bcftools_1_3 revision 43a9aebf3adb owned by iuc
Repository package_tabix_0_2_6 revision 389d2376b60b owned by iuc
Repository package_samtools_1_2 revision f6ae3ba3f3c1 owned by iuc
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository package_bcftools_1_3 revision 43a9aebf3adb owned by iuc
Repository package_tabix_0_2_6 revision 389d2376b60b owned by iuc
Repository package_samtools_1_2 revision f6ae3ba3f3c1 owned by iuc
Repository package_ncurses_5_9 revision 335ebf512407 owned by iuc (prior install required)
Repository package_zlib_1_2_8 revision 411985b46ae8 owned by iuc (prior install required)
Repository bcftools_consensus revision 2363ef414c9b owned by iuc
Repository bcftools_plugin_tag2tag revision 6cbb9c47795c owned by iuc
Repository bcftools_stats revision baa8823f8073 owned by iuc
Repository bcftools_merge revision 7ba36babba2d owned by iuc
Repository bcftools_reheader revision d68c43202172 owned by iuc
Repository bcftools_norm revision 19905c025d2a owned by iuc
Repository bcftools_plugin_fixploidy revision 12152af85697 owned by iuc
Repository bcftools_plugin_dosage revision d31a2e310a52 owned by iuc
Repository bcftools_plugin_fill_tags revision e493702b19eb owned by iuc
Repository bcftools_gtcheck revision a1213a0b7b66 owned by iuc
Repository bcftools_plugin_mendelian revision 3ff5654b4e7d owned by iuc
Repository bcftools_annotate revision 6a88248893c4 owned by iuc
Repository bcftools_plugin_missing2ref revision 31c096c6b156 owned by iuc
Repository bcftools_filter revision cdb7b4927742 owned by iuc
Repository bcftools_csq revision 039ea3f1dea9 owned by iuc
Repository bcftools_roh revision b0d39ef600a7 owned by iuc
Repository bcftools_query_list_samples revision 18cf9de1cf73 owned by iuc
Repository bcftools_convert_to_vcf revision 367ba501b6eb owned by iuc
Repository bcftools_query revision e0ad88dec40d owned by iuc
Repository bcftools_isec revision 709dd8291b83 owned by iuc
Repository bcftools_concat revision 62ca6da715bf owned by iuc
Repository bcftools_plugin_setgt revision 09f5e45a8212 owned by iuc
Repository bcftools_view revision d1f8f55f564d owned by iuc
Repository bcftools_convert_from_vcf revision 09f37afb3621 owned by iuc
Repository bcftools_plugin_impute_info revision 6f8e223f78f3 owned by iuc
Repository bcftools_plugin_counts revision 71c78e0eea52 owned by iuc
Repository bcftools_call revision 0fba2c15b40d owned by iuc
Repository bcftools_mpileup revision 4e1d23e5c691 owned by iuc
Repository bcftools_plugin_fill_an_ac revision 026a989b7cee owned by iuc
Repository bcftools_cnv revision bf1f4994f104 owned by iuc

Categories
Variant Analysis - Tools for single nucleotide polymorphism data such as WGA