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Repository abricate
Name: abricate
Owner: iuc
Synopsis: Mass screening of contigs for antiobiotic resistance genes
Mass screening of contigs for antimicrobial resistance or virulence genes. It comes bundled with 
multiple databases: NCBI, CARD, ARG-ANNOT, Resfinder, NCBI, EcOH, PlasmidFinder, Ecoli_VF and VFDB.
Content homepage: https://github.com/tseemann/abricate
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/abricate/
Link to this repository revision: https://toolshed.g2.bx.psu.edu/view/iuc/abricate/862f5a86854d
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/abricate
Type: unrestricted
Revision: 0:862f5a86854d
This revision can be installed: True
Times cloned / installed: 1366
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_gnu_coreutils_8_25 revision a177f177d42f owned by iuc (prior install required)
Repository package_abricate_0_3 revision 8c7976eed9c3 owned by iuc
Repository package_blast_plus_2_2_31 revision 921d2963a177 owned by iuc

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
abricate 0.3 package
blast+ 2.2.31 package
perl 5.18.1 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
0.1.0 any
0.1.0 any

Categories
Sequence Analysis - Tools for performing Protein and DNA/RNA analysis