Galaxy |

Repository align_back_trans

Name: align_back_trans

Owner: peterjc

Synopsis: Thread nucleotides onto a protein alignment (back-translation)

Detailed description:

Takes an input file of aligned protein sequences (typically FASTA or Clustal
format), and a matching file of unaligned nucleotide sequences (FASTA format,
using the same identifiers), and threads the nucleotide sequences onto the
protein alignment to produce a codon aware nucleotide alignment - which can
be viewed as a back translation.

Content homepage: https://github.com/peterjc/pico_galaxy/tree/master/tools/align_back_trans

Development repository: https://github.com/peterjc/pico_galaxy/tree/master/tools/align_back_trans

Link to this repository: https://toolshed.g2.bx.psu.edu/view/peterjc/align_back_trans/883842b81796

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/peterjc/align_back_trans

Type: unrestricted

Revision: 7:883842b81796

This revision can be installed: True

Times cloned / installed: 902

Tool dependencies - repository tools require handling of these dependencies
Name	Version	Type
biopython	1.67	package

Tool dependencies - repository tools require handling of these dependencies

Name

Version

Type

biopython

1.67

package

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name	Description	Version	Minimum Galaxy Version
Thread nucleotides onto a protein alignment (back-translation) View tool metadata	Gives a codon aware alignment	0.0.10	16.01

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata

Name

Description

Version

Minimum Galaxy Version

View tool metadata

Gives a codon aware alignment

0.0.10

16.01