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Repository samtools_filter
Name: samtools_filter
Owner: jjohnson
Synopsis: Flter BAM/SAM on FLAG,MAPQ,RG,LB or by region
Uses samtools view to filter a BAM/SAM on FLAG, MAPQ, RG, LB or by region
Link to this repository: https://toolshed.g2.bx.psu.edu/view/jjohnson/samtools_filter/9710e9bcc5f3
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/jjohnson/samtools_filter
Type: unrestricted
Revision: 2:9710e9bcc5f3
This revision can be installed: True
Times cloned / installed: 1226
Dependencies of this repository

Repository dependencies - installation of these additional repositories is required
Repository package_samtools_0_1_18 revision 171cd8bc208d owned by devteam

Tool dependencies - repository tools require handling of these dependencies
Name Version Type
samtools 0.1.18 package

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
files on FLAG MAPQ RG LN or by region 1.1.1 any

Categories
SAM - Tools for manipulating alignments in the SAM format