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Repository dexseq
Name: dexseq
Owner: iuc
Synopsis: Inference of differential exon usage in RNA-Seq
Estimate variance-mean dependence in count data from high-throughput sequencing assays and test for differential
expression based on a model using the negative binomial distribution
Content homepage: https://www.bioconductor.org/packages/release/bioc/html/DEXSeq.html
Development repository: https://github.com/galaxyproject/tools-iuc/tree/master/tools/dexseq
Link to this repository: https://toolshed.g2.bx.psu.edu/view/iuc/dexseq/9a7c5b6d8f1e
Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/iuc/dexseq
Type: unrestricted
Revision: 11:9a7c5b6d8f1e
This revision can be installed: True
Times cloned / installed: 1844

Contents of this repository

Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Name Description Version Minimum Galaxy Version
Determines differential exon usage from count tables 1.48.0+galaxy0 22.01
Prepare and count exon abundancies from RNA-seq data 1.48.0+galaxy0 22.01
Visualization of the per gene DEXSeq results 1.48.0+galaxy0 22.01

Categories
Transcriptomics - Tools for use in the study of Transcriptomics.
RNA - Utilities for RNA
Statistics - Tools for generating statistics