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Repository pileup_interval

Name: pileup_interval

Owner: devteam

Synopsis: Pileup-to-Interval condenses pileup format into ranges of bases

Detailed description:

Reduces the size of a results set by taking a pileup file and producing
a condensed version showing consecutive sequences of bases meeting coverage criteria.
The tool works on six and ten column pileup formats produced with *samtools pileup*
command. You also can specify columns for the input file manually. The tool assumes
that the pileup dataset was produced by *samtools pileup* command (although you
can override this by setting column assignments manually).

Development repository: https://github.com/galaxyproject/tools-devteam/tree/master/tools/pileup_interval

Link to this repository: https://toolshed.g2.bx.psu.edu/view/devteam/pileup_interval/9c1c0b947e46

Clone this repository: hg clone https://toolshed.g2.bx.psu.edu/repos/devteam/pileup_interval

Type: unrestricted

Revision: 4:9c1c0b947e46

This revision can be installed: True

Times cloned / installed: 4457

Contents of this repository

Name	Description	Version	Minimum Galaxy Version
Valid tools - click the name to preview the tool and use the pop-up menu to inspect all metadata
Pileup-to-Interval View tool metadata	condenses pileup format into ranges of bases	1.0.3	16.01